Dear all,
While calculating pair wise per-residue decomposition energy of a protein
complex, my data shows two significantly different energy for two a pari of
residue in the interface that were making hydrogen bond interactions. One
is aspartic acid and the other one is arginine. while decomposition energy
of Arg -Asp is about -10 kcal/mol the decompositon energy of Asp-Arg is
showing up as -0.6 kcal/mol.
Is it supposed to be symmetrical value? I mean, aren't they supposed to be
close to each other if they are making hydrogen bond interactions at the
interface?
Any clarification would be appreciated.
sincerely,
Jag
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Aug 14 2017 - 08:00:03 PDT
