Re: [AMBER] Building of beta strand

From: Rajarshi Roy <phd1701171011.iiti.ac.in>
Date: Wed, 2 Aug 2017 22:02:52 +0530

Hi
 No. I want to create hydrogen bond between two peptide chain. And also i
want to create array peptide chain like beta strand

On 02-Aug-2017 9:59 PM, "Hai Nguyen" <nhai.qn.gmail.com> wrote:

> Yes. tleap can add hydrogen and missing atoms
>
> Hai
>
> On Wed, Aug 2, 2017 at 10:51 AM Rajarshi Roy <phd1701171011.iiti.ac.in>
> wrote:
>
> > Hi,
> > I created a modified short peptide and want to create beta strand
> > like structure of 3-8 residue.I build that modified peptide using
> > avogadro. How can I create hydrogen bond between that peptide to 3 to 8
> > array of that?
> > Can it be done using amber or other.?
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> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
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Received on Wed Aug 02 2017 - 10:00:03 PDT
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