[AMBER] counting ions - doubt-urgent

From: Mary Varughese <maryvj1985.gmail.com>
Date: Wed, 26 Jul 2017 15:35:15 +0530

Hi

I have some ions related doubts

*Is it possible to count Na+ ions with in the 3.6 A distance of atoms
specified with in a mask?

*In the below command does ions also get imaged along with water (I want to
do grid analysis of Na+ ions)

center :1-12 mass origin
image origin center familiar
center :1-24 mass origin
image origin center familiar


Thanking you


mary
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Received on Wed Jul 26 2017 - 03:30:02 PDT
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