On Fri, Jul 14, 2017, Saikat Pal wrote:
> saikat.saikat:~$ /home/saikat/AMBER/amber-14/amber16/bin/xleap -s -f /home/saikat/AMBER/amber-14/amber16/dat/
The above command is misformed: you are asking LEaP to use
/home/saikat/AMBER/amber-14/amber16/dat/ as an input file, but that is a
directory. In fact, when I do the equivalent of the above, I get a pretty
good error message:
slater% tleap -s -f ~/amber16/dat
-I: Adding /home/case/amber16/dat/leap/prep to search path.
-I: Adding /home/case/amber16/dat/leap/lib to search path.
-I: Adding /home/case/amber16/dat/leap/parm to search path.
-I: Adding /home/case/amber16/dat/leap/cmd to search path.
-s: Ignoring startup file: leaprc
-f: Source /home/case/amber16/dat.
Welcome to LEaP!
/home/case/amber16/dat is a directory
> 0README map.NEF-AMBER PROTON_INFO reduce_wwPDB_het_dict.txt XaLeap_wcl
> map.DG-AMBER pixmap/ PROTON_INFO.pdbv2 slko/
It's not clear what the information above is. Did you run the "ls" command
in the $AMBERHOME/dat directory? If so, you are missing much more than just
the leap subdirectory. I'd recommend re-installing AmberTools17 into a fresh
directory tree.
....dac
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Received on Fri Jul 14 2017 - 18:00:03 PDT
