Thank you, Sir, for your kind response. Using Ambertools 17 cpptraj works fine. Can I use xleap of amber 16?? is this work??
Thanks and regards, Saikat Pal
On Thursday 13 July 2017, 5:34:58 PM IST, Daniel Roe <daniel.r.roe.gmail.com> wrote:
On Thu, Jul 13, 2017 at 2:18 AM, Saikat Pal <saikatpaliitg.yahoo.com> wrote:
> make[2]: Leaving directory '/home/saikat/AMBER/amber-14/amber16/AmberTools/src'
>
> Installation of AmberTools17 serial is complete at Thu Jul 13 11:19:47 IST 2017.
>
> make[1]: Leaving directory '/home/saikat/AMBER/amber-14/amber16/AmberTools/src'
> ==============================================================
> /home/saikat/AMBER/amber-14/amber16//src/Makefile not found, or -noamber was set.
> This is expected if you do not have Amber16.
> ==============================================================
As the message states, AmberTools 17 installed just fine. The last
message is just letting you know that you don't have Amber 16, so all
is well.
> Error: Could not import Amber Python modules!
> Probably your Amber Python environment was not set up correctly.
>
> We recommend adding the line:
>
> test -f /home/saikat/AMBER/amber-14/amber16//amber.sh && source /home/saikat/AMBER/amber-14/amber16//amber.sh (sh/bash/zsh)
> or
> test -f /home/saikat/AMBER/amber-14/amber16//amber.csh && source /home/saikat/AMBER/amber-14/amber16//amber.csh (csh/tcsh)
>
> to your login shell resource file (e.g., ~/.bashrc or ~/.cshrc).
This message is about as clear as error messages get. You need to
'source /home/saikat/AMBER/amber-14/amber16//amber.sh' (or the .csh
version if you have C shell).
-Dan
> Makefile:8: recipe for target 'test' failed
> make[1]: *** [test] Error 1
> make[1]: Leaving directory '/home/saikat/AMBER/amber-14/amber16/AmberTools/test'
> Makefile:61: recipe for target 'test.serial' failed
> make: *** [test.serial] Error 2
>
>
>
> what should I do ??plz help me out.
> Thanks and regards,
> Saikat Pal
> On Wednesday 12 July 2017, 8:51:27 PM IST, Daniel Roe <daniel.r.roe.gmail.com> wrote:
>
> Use amber16, and source the amber.sh (or amber.csh) file that is
> created therein to set up your environment. The only thing from
> amber14 that isn't in AmberTools 17 is pmemd, and that does not
> require that AMBERHOME is set.
>
> -Dan
>
> On Wed, Jul 12, 2017 at 11:01 AM, Saikat Pal <saikatpaliitg.yahoo.com> wrote:
>> Dear all,
>> I want to install Amber 14 with AMBER 17 tools.When I untar AmberTools17.tar.bz2 it creates amber16 folder and Amber14.tar.bz2 it creates amber14 .There are 2 folders generated.Which one should I export for AMBERHOME?Plz help me out .
>> Thanks and regards
>> Saikat
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>
>
>
> --
> -------------------------
> Daniel R. Roe
> Laboratory of Computational Biology
> National Institutes of Health, NHLBI
> 5635 Fishers Ln, Rm T900
> Rockville MD, 20852
> https://www.lobos.nih.gov/lcb
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
--
-------------------------
Daniel R. Roe
Laboratory of Computational Biology
National Institutes of Health, NHLBI
5635 Fishers Ln, Rm T900
Rockville MD, 20852
https://www.lobos.nih.gov/lcb
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Received on Thu Jul 13 2017 - 06:00:03 PDT
