Thank you sir for your reply. I have followed your opinion.
make install
this is the last part:
running install_scripts
copying build/scripts-2.7/pdb4amber -> /home/saikat/AMBER/amber-14/amber16//bin
changing mode of /home/saikat/AMBER/amber-14/amber16//bin/pdb4amber to 775
running install_egg_info
Writing /home/saikat/AMBER/amber-14/amber16//lib/python2.7/site-packages/pdb4amber-1.3-py2.7.egg-info
/home/saikat/AMBER/amber-14/amber16//bin/amber.python fix_conda_fortran.py
make[2]: Leaving directory '/home/saikat/AMBER/amber-14/amber16/AmberTools/src'
Installation of AmberTools17 serial is complete at Thu Jul 13 11:19:47 IST 2017.
make[1]: Leaving directory '/home/saikat/AMBER/amber-14/amber16/AmberTools/src'
==============================================================
/home/saikat/AMBER/amber-14/amber16//src/Makefile not found, or -noamber was set.
This is expected if you do not have Amber16.
==============================================================
Now when I command "make test" this error is showing:
make test
(cd AmberTools/test && make test)
make[1]: Entering directory '/home/saikat/AMBER/amber-14/amber16/AmberTools/test'
./test_at_serial.sh
Error: Could not import Amber Python modules!
Probably your Amber Python environment was not set up correctly.
We recommend adding the line:
test -f /home/saikat/AMBER/amber-14/amber16//amber.sh && source /home/saikat/AMBER/amber-14/amber16//amber.sh (sh/bash/zsh)
or
test -f /home/saikat/AMBER/amber-14/amber16//amber.csh && source /home/saikat/AMBER/amber-14/amber16//amber.csh (csh/tcsh)
to your login shell resource file (e.g., ~/.bashrc or ~/.cshrc).
Makefile:8: recipe for target 'test' failed
make[1]: *** [test] Error 1
make[1]: Leaving directory '/home/saikat/AMBER/amber-14/amber16/AmberTools/test'
Makefile:61: recipe for target 'test.serial' failed
make: *** [test.serial] Error 2
what should I do ??plz help me out.
Thanks and regards,
Saikat Pal
On Wednesday 12 July 2017, 8:51:27 PM IST, Daniel Roe <daniel.r.roe.gmail.com> wrote:
Use amber16, and source the amber.sh (or amber.csh) file that is
created therein to set up your environment. The only thing from
amber14 that isn't in AmberTools 17 is pmemd, and that does not
require that AMBERHOME is set.
-Dan
On Wed, Jul 12, 2017 at 11:01 AM, Saikat Pal <saikatpaliitg.yahoo.com> wrote:
> Dear all,
> I want to install Amber 14 with AMBER 17 tools.When I untar AmberTools17.tar.bz2 it creates amber16 folder and Amber14.tar.bz2 it creates amber14 .There are 2 folders generated.Which one should I export for AMBERHOME?Plz help me out .
> Thanks and regards
> Saikat
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
--
-------------------------
Daniel R. Roe
Laboratory of Computational Biology
National Institutes of Health, NHLBI
5635 Fishers Ln, Rm T900
Rockville MD, 20852
https://www.lobos.nih.gov/lcb
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Received on Wed Jul 12 2017 - 23:30:02 PDT
