Re: [AMBER] addAtomType

From: Rana Rehan Khalid <rrkhalid.umich.edu>
Date: Wed, 12 Jul 2017 01:09:38 -0400

Hai
 next time I ask question more precisely Thanks.

On Wed, Jul 12, 2017 at 12:55 AM, Hai Nguyen <nhai.qn.gmail.com> wrote:

> You email title:
> > [AMBER] addAtomType
>
> Your question:
> > is there anyone tell me how we can add atom type in the leaprc
>
> Your real problem:
> > I have to add sp0 atomtype with hybridization type directly into the
> > leaprc file. searching an example
>
> In my experience, correctly specifying your problem in your email
> title and in question
> will help (you) to get more details and helpful reply.
>
> cheers
> Hai
>
> On Wed, Jul 12, 2017 at 12:38 AM, Rana Rehan Khalid <rrkhalid.umich.edu>
> wrote:
> >
> > I have to add sp0 atomtype with hybridization type directly into the
> > leaprc file. searching an example
> >
> > On Wed, Jul 12, 2017 at 12:23 AM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> >
> > > have you google yet? ;)
> > >
> > > Hai
> > >
> > > On Tue, Jul 11, 2017 at 11:36 PM, Rana Rehan Khalid <
> rrkhalid.umich.edu>
> > > wrote:
> > >
> > > > yes i read, Is there any example for add atomtype command? as
> tutorial
> > > > mention for add command
> > > >
> > > > thanks
> > > >
> > > > On Tue, Jul 11, 2017 at 10:25 PM, Hai Nguyen <nhai.qn.gmail.com>
> wrote:
> > > >
> > > > > Search for that keyword here: http://ambermd.org/doc12/Amber17.pdf
> > > > >
> > > > > Hai
> > > > >
> > > > > On Tue, Jul 11, 2017 at 10:20 PM, Rana Rehan Khalid <
> > > rrkhalid.umich.edu>
> > > > > wrote:
> > > > >
> > > > > > I have my own frcmod and prep.in file that contain Isymbol(atom
> > > type)
> > > > > that
> > > > > > are not in leaprc file when i load my pdb file it shows add
> atomtype
> > > > > > """which needs to be added via addAtomTypes""" . is there anyone
> tell
> > > > me
> > > > > > how we can add atom type in the leaprc
> > > > > >
> > > > > > Kind Regards
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Received on Tue Jul 11 2017 - 22:30:03 PDT
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