You edited the pdb to change the residue name, deleted any extra atoms,
and made the atom names agree with the names for that residue, and it
did not place a new atom for you?
Bill
On 7/7/17 1:14 PM, Rana Rehan Khalid wrote:
> No its not added Sir. Actually I want to convert only one position
> hydrogen. remove the epsilon position hydrogen and add it to Delta position
> Histidine mean convert HIE TO HID
>
> On Fri, Jul 7, 2017 at 3:51 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>
>> Have you tried just loadpdb, and see if leap places the H?
>>
>> Bill
>>
>>
>> On 7/7/17 12:44 PM, Rana Rehan Khalid wrote:
>>> Hi Everyone
>>>
>>> I want to change Histidine protonation state. After H++ the pdb file
>> show
>>> HIE but i want to change it HID, because in my protein NE position bonded
>>> with Fe. While according to HIE that NE protonaed H. I tried to manually
>>> change the HIE to HID and remove that NE hydrogen. But I think i have to
>>> protonate the ND position Kindly tell me how can i do this?
>>>
>>> Thanks
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>>
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Received on Fri Jul 07 2017 - 13:30:03 PDT
