Have you tried just loadpdb, and see if leap places the H?
Bill
On 7/7/17 12:44 PM, Rana Rehan Khalid wrote:
> Hi Everyone
>
> I want to change Histidine protonation state. After H++ the pdb file show
> HIE but i want to change it HID, because in my protein NE position bonded
> with Fe. While according to HIE that NE protonaed H. I tried to manually
> change the HIE to HID and remove that NE hydrogen. But I think i have to
> protonate the ND position Kindly tell me how can i do this?
>
> Thanks
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Received on Fri Jul 07 2017 - 13:00:03 PDT
