On Wed, Jul 05, 2017, Rana Rehan Khalid wrote:
> >
> > > I use this command to convert NITRIC OXIDE containing pdb file to mol2
> > >
> > > antechamber -fi pdb -fo mol2 -i NIT.pdb -o NIT.mol2 -pf y
I can't reproduce your result. I've attached the mol2 file I get with the
above command.
Be sure that the antechamber tests are passing with your installation. I used
AmberTools17, but nothing has changed from AmberTools16 that should be
relevant here. Probably worth double-checking your run.
Maybe someone else on the list has seen all of the atom types get replaced
with the residue name, and can chime in here.
....dac
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Received on Wed Jul 05 2017 - 09:30:02 PDT
