Hello. I run MD for protein complex docked, in complex pdb file
(preparation result), there are 292 residu number, which 1-291 are protein
(receptor) amino acid residue and residue number 292 is the ligand name
UNL. When I run preparation solvated box and without no box, there are
written like:
there is bond 297 <UNL> <Br>
There is bond 297 <UNL> <H>
It written UNL in 297 residu. I confuse how Amber read my protein residue
number? How I can see the list of all residue number, I have to know what
is residue number of the ligand, I need to fix it because I want analyst it
with RMSD, MMPBSA, etc.
I hope anybody can help me. Thanks
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Received on Tue Jul 04 2017 - 08:30:02 PDT
