Re: [AMBER] amber installations error in cygwin

From: Hai Nguyen <nhai.qn.gmail.com>
Date: Fri, 30 Jun 2017 13:37:09 +0000

Hi

It you are using win10, you can try follow section:

http://ambermd.org/amber_install.html

Ps: windows platform is not well supported.
Ps2: please upgrade to Ambertools 17 (free).

Hai

On Fri, Jun 30, 2017 at 9:31 AM venkat <azbvenkat.gmail.com> wrote:

> respected amber users,
>
> tried install amber12 and ambertools13 (cygwin CYGWIN_NT-6.1-WOW , i686
> Cygwin)
>
> cd amber12
> after patch and update ()
>
> ./configure -cygwin gnu
>
> make install
>
> follwoing error obtained
> -----------------------------------------------
> DBfile.cpp
> g++ -c -I/home/tmp/amber12//include -O3 -msse -mfpmath=sse -DCYGWIN
> -DBINTRAJ -DHASGZ -DHASBZ2 -I/home/tmp/amber12//include -o
> ProgressBar.o ProgressBar.cpp
> g++ -c -I/home/tmp/amber12//include -O3 -msse -mfpmath=sse -DCYGWIN
> -DBINTRAJ -DHASGZ -DHASBZ2 -I/home/tmp/amber12//include -o PubFFT.o
> PubFFT.cpp
> g++ -c -I/home/tmp/amber12//include -O3 -msse -mfpmath=sse -DCYGWIN
> -DBINTRAJ -DHASGZ -DHASBZ2 -I/home/tmp/amber12//include -Ireadline -o
> ReadLine.o ReadLine.cpp
> g++ -c -I/home/tmp/amber12//include -O3 -msse -mfpmath=sse -DCYGWIN
> -DBINTRAJ -DHASGZ -DHASBZ2 -I/home/tmp/amber12//include -o
> StringRoutines.o StringRoutines.cpp
> StringRoutines.cpp: In function ‘std::string tildeExpansion(const char*)’:
> StringRoutines.cpp:29:25: error: ‘GLOB_TILDE’ was not declared in this
> scope
> if ( glob(filenameIn, *GLOB_TILDE, NULL*, &globbuf)!=0 )
> ^
> make[3]: *** [Makefile_at:63: StringRoutines.o] Error 1
> make[3]: Leaving directory '/home/tmp/amber12/AmberTools/src/cpptraj/src'
> make[2]: *** [Makefile:15: install] Error 2
> make[2]: Leaving directory '/home/tmp/amber12/AmberTools/src/cpptraj'
> make[1]: *** [Makefile:28: serial] Error 2
> make[1]: Leaving directory '/home/tmp/amber12/AmberTools/src'
> make: *** [Makefile:7: install] Error 2
> ----------------
>
> based on error, searched in amber mailing list found following link
> http://archive.ambermd.org/201412/0321.html
>
> changed config.h accordingly
>
> COPTFLAGS=-O3 -mtune=native
> becomes
> COPTFLAGS=-O3
>
> (gcc (GCC) 5.4.0 version )
>
> but same error getting
>
> sincerely
> venkat
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Jun 30 2017 - 07:00:04 PDT
Custom Search