Date: Wed, 28 Jun 2017 14:04:55 -0400
this is the error sir how i copy the command from xleap because when i
select the command and ctrl-c it does not copy here is the image i send you
On Wed, Jun 28, 2017 at 1:55 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:
> Are you running any differently? Perhaps you need to source amber.sh in
> your run script?
>
> If this doesn't help, please copy/paste all commands you are using (and
> script contents if any).
>
> Bill
>
>
> On 6/28/17 10:52 AM, Núbia Prates wrote:
> > Yes, I did. But I tried sander before and a had any problems.
> >
> >
> > Nubia
> >
> >
> > ________________________________
> > De: Bill Ross <ross.cgl.ucsf.edu>
> > Enviado: quarta-feira, 28 de junho de 2017 14:44
> > Para: amber.ambermd.org
> > Assunto: Re: [AMBER] sander do not write rst and mdcrd files
> >
> > Did you read the install instructions about amber.sh or amber.csh?
> >
> > Bill
> >
> >
> > On 6/28/17 10:42 AM, Núbia Prates wrote:
> >> I dont see any error messages. Now that I have write permission it
> returns:
> >>
> >> sander: command not found
> >>
> >>
> >> Nubia
> >>
> >>
> >>
> >> ________________________________
> >> De: Bill Ross <ross.cgl.ucsf.edu>
> >> Enviado: quarta-feira, 28 de junho de 2017 14:27
> >> Para: amber.ambermd.org
> >> Assunto: Re: [AMBER] sander do not write rst and mdcrd files
> >>
> >> Are you seeing any error messages? Do you have write permission in the
> >> directory the files are supposed to appear in?
> >>
> >> Bill
> >>
> >>
> >> On 6/28/17 10:19 AM, Núbia Prates wrote:
> >>> Hello,
> >>>
> >>>
> >>> I am using the following command to generate some files during
> equilibrate step:
> >>>
> >>>
> >>> sander -O -i equi_10.in -p complex.top -c heat.rst -r equi_10.rst -o
> equi_10.out -x equi_10.mdcrd -ref heat.rst
> >>>
> >>>
> >>> The problem is that sander do not write the "equi_10.rst" and "
> equi_10.mdcrd" files.
> >>>
> >>> Can you help me with that?
> >>>
> >>>
> >>> Regards
> >>>
> >>> Nubia
> >>> _______________________________________________
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> mailman/listinfo/amber>
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> mailman/listinfo/amber>
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> It is designed to provide a forum for users of the AMBER Molecular Dynamics
> and related ...
> >
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> >> lists.ambermd.org
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> List. It is designed to provide a forum for users of the AMBER Molecular
> Dynamics and related ...
> >>
> >>
> >> _______________________________________________
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> mailman/listinfo/amber>
> > lists.ambermd.org
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> It is designed to provide a forum for users of the AMBER Molecular Dynamics
> and related ...
> >
> >
> >
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(image/png attachment: Screenshot_from_2017-06-28_14-02-28.png)
