I dont see any error messages. Now that I have write permission it returns:
sander: command not found
Nubia
________________________________
De: Bill Ross <ross.cgl.ucsf.edu>
Enviado: quarta-feira, 28 de junho de 2017 14:27
Para: amber.ambermd.org
Assunto: Re: [AMBER] sander do not write rst and mdcrd files
Are you seeing any error messages? Do you have write permission in the
directory the files are supposed to appear in?
Bill
On 6/28/17 10:19 AM, Núbia Prates wrote:
> Hello,
>
>
> I am using the following command to generate some files during equilibrate step:
>
>
> sander -O -i equi_10.in -p complex.top -c heat.rst -r equi_10.rst -o equi_10.out -x equi_10.mdcrd -ref heat.rst
>
>
> The problem is that sander do not write the "equi_10.rst" and " equi_10.mdcrd" files.
>
> Can you help me with that?
>
>
> Regards
>
> Nubia
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Received on Wed Jun 28 2017 - 11:00:03 PDT
