[AMBER] visualizing first mode of motion from PCA analysis in chimera or vmd

From: Thakur, Abhishek <axt651.miami.edu>
Date: Thu, 8 Jun 2017 21:16:38 +0000

Hi

Using the tutorial on amber website

http://www.amber.utah.edu/AMBER-workshop/London-2015/pca/pca-cpu-gpu.cpptraj


I have generated the cpu-gpu-modes.prmtop and cpu-gpu-modes.nc to analyze the

first mode of motion in chimera or VMD.

But I am unable to see anything on these softwares. Can anyone guide me how to visualtize it?



Thaning you,
Abhishek

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Received on Thu Jun 08 2017 - 14:30:02 PDT