On Tue, Jun 06, 2017, Supriyo Naskar wrote:
> I have a solvated DNA into water and want to calculate the volume fraction
> of DNA.
I don't think Amber alone can do this. I believe you need to use some
other program, e.g. one of those listed here:
http://www.ugr.es/~hilario/PMPLAB/Surfaces.html
Use that to get the DNA volume, then divide by the volume of the periodic
box you are using.
...hope this helps....dac
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jun 07 2017 - 09:30:02 PDT
