Re: [AMBER] Dummy atoms when running antechamber in B4 (sustiva) tutorial

From: Nikolay N. Kuzmich <nnkuzmich.gmail.com>
Date: Thu, 1 Jun 2017 19:50:28 +0300

Dear David,

thank you very much for your explanations.
Would like to ask you and other Amber users
why xleap refused to create prmtop and inpcrd files for sustiva molecule
(there is a screenshot from xleap window enclosed).
It was not OK with the parameters in the tutorial example either,
but in my case the discrepancies turned out to be more critical.
Although the Gaussian-optimized structure looked nice...

Thank you in advance,
Nick


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Sustiva_xleap2.png
(image/png attachment: Sustiva_xleap2.png)

Sustiva_xleap.png
(image/png attachment: Sustiva_xleap.png)

Received on Thu Jun 01 2017 - 10:00:03 PDT
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