Right, I am a devotee of macports because of the extensive scienentific software collection and because I can troubleshoot it, unlike some of the other software respositories for mac.
I use macports Python and the other macports compilers by default.
I try to avoid the ones provided by Apple.
I update my large collection of ports every morning as part of my daily routine , so I would have used the current versions.
Best regards,
Blaine
Blaine Mooers, Ph.D.
Assistant Professor
Department of Biochemistry and Molecular Biology, College of Medicine
University of Oklahoma Health Sciences Center
975 NE 10th Street, BRC 466
Oklahoma City, OK 73104-5419
Faculty webpage X-ray lab (LBSF) Molecular Graphics Links Small Angle Scattering
office: (405) 271-8300 lab: (405) 271-8313 e-mail: blaine-mooers.ouhsc.edu
________________________________________
From: David Case [david.case.rutgers.edu]
Sent: Sunday, April 23, 2017 8:00 AM
To: AMBER Mailing List
Subject: Re: [AMBER] AmberTools17: test of mpi configuration with pnetcdf failed on Mac OS X 10.10
On Sat, Apr 22, 2017, Mooers, Blaine H.M. (HSC) wrote:
> I have 8 cores. I used 8 processors earlier.
> I reran 'make test' this afternoon with 4 processors.
> The tests ran to completion without hanging.
Great. We'll take a look at the mwabmd test case as a function of
the number of processors, and issue a bugfix to try to keep this from
happening to other users. Thanks for the report.
> 1) which mpi am I using?
>
> /opt/local/bin/mpicc --version
> Apple LLVM version 7.0.2 (clang-700.1.81)
> Target: x86_64-apple-darwin14.5.0
> Thread model: posix
It looks like you installed your mpi from MacPorts: do you remember which
package you used? (May not be important.)
....regards...dac
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Received on Sun Apr 23 2017 - 09:30:03 PDT
