And just to follow up, the version of python in the directory
$AMBERHOME/miniconda/bin
is python2.7
------
Joseph Baker, PhD
Assistant Professor
Department of Chemistry
C101 Science Complex
The College of New Jersey
Ewing, NJ 08628
Phone: (609) 771-3173
Web: http://bakerj.pages.tcnj.edu/
On Fri, Apr 21, 2017 at 3:17 PM, Baker, Joseph <bakerj.tcnj.edu> wrote:
> Hi Hai,
>
> It is python 2.6.6 which has worked for all previous versions without
> problems (Amber14 and AmberTools15, Amber16 and AmberTools16).
>
> Joe
>
>
> ------
> Joseph Baker, PhD
> Assistant Professor
> Department of Chemistry
> C101 Science Complex
> The College of New Jersey
> Ewing, NJ 08628
> Phone: (609) 771-3173
> Web: http://bakerj.pages.tcnj.edu/
>
>
> On Fri, Apr 21, 2017 at 3:07 PM, Nhai <nhai.qn.gmail.com> wrote:
>
> > What's your python version?
> >
> > Hai Nguyen
> >
> > > On Apr 21, 2017, at 2:41 PM, Baker, Joseph <bakerj.tcnj.edu> wrote:
> > >
> > > Hi all,
> > >
> > > I tried running ./update_amber --upgrade and get the following output
> > >
> > > [root.neon amber16]# ./update_amber --upgrade
> > > You are about to perform a major upgrade. This is NOT reversible.
> > >
> > > Do you wish to continue? (y/N) y
> > > Downloading updates for AmberTools 16
> > > Downloading AmberTools 16/update.21 (1.14 KB)
> > > Applying AmberTools 16/update.21
> > > Downloading updates for Amber 16
> > > Downloading Amber 16/update.7 (1.42 KB)
> > > Applying Amber 16/update.7
> > > If the upgrade attempt fails, or you have made any custom changes
> > > to the AmberTools source code, please download the AmberTools17
> > > tarball from http://ambermd.org/AmberTools17-get.html
> > >
> > > NOTE: This upgrade cannot be reversed!
> > > Downloading upgrade.patch.bz2 (2.49 MB)
> > > Downloading: [::::::::::::::::::::::::::::::::::::::::::::::::::]
> 100.0%
> > > Done.
> > > Attempting the upgrade. Please wait...
> > > Finalizing the upgrade
> > > Downloading Upgrade Finalizer (87.14 KB)
> > >
> > > Deleting old files
> > >
> > >
> > > Downloading the new files archive
> > >
> > > Downloading upgrade.tar.bz2 (61.85 MB)
> > > Downloading: [::::::::::::::::::::::::::::::::::::::::::::::::::]
> 100.0%
> > > Done.
> > > Traceback (most recent call last):
> > > File "./upgrade", line 1062, in <module>
> > > with tarfile.open(os.path.join('.', 'upgrade.tar.bz2'),'r:bz2') as
> > tar:
> > > AttributeError: 'TarFile' object has no attribute '__exit__'
> > > Warning: Possible error detected in upgrade...
> > >
> > >
> > > And now there is a upgrade.tar.bz2 file hanging around in my $AMBERHOME
> > > directory, and starting cpptraj is still showing
> > >
> > > CPPTRAJ: Trajectory Analysis. V16.16
> > >
> > > I have not made any custom changes to the AmberTools source code.
> > >
> > > Thanks,
> > > Joe
> > >
> > > ------
> > > Joseph Baker, PhD
> > > Assistant Professor
> > > Department of Chemistry
> > > C101 Science Complex
> > > The College of New Jersey
> > > Ewing, NJ 08628
> > > Phone: (609) 771-3173
> > > Web: http://bakerj.pages.tcnj.edu/
> > > _______________________________________________
> > > AMBER mailing list
> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
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>
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Received on Fri Apr 21 2017 - 12:30:04 PDT
