Hi everyone,
I have made a complex with tleap.
In that complex I have made 6 bonds using bond command.
But when I visualize that in chimera I am unable to find any bonds.
So then I have used my prmtop and inpcrd file and cpptraj to generate pdb file for me to make sure there is a bond. But not I can see one of the bonds, remaining 5 bonds are not shown by chimera till now.
Then I have visualized in VMD and I can find 5 bonds but still 1 bond is missing.
Can anyone suggest me a way by which I can make sure that my parameter files have bonds.
with regards,
-Abhi
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Received on Thu Apr 20 2017 - 12:00:02 PDT
