I have two pdb files each containing a single piece of dsDNA. In file1.pdb
the DNA has 24 residues. In file2.pdb the DNA has 28 residues.
I wish to use residues 3-10, 15-22 in file1 as a reference for comparison
with residues 4-11, 18-25 of file2. File2 is a 1ns trajectory of solvated
dsDNA. File1 is a single frame of unsolvated dsDNA.
How do I do this using cpptraj? I have the prmtop files for both File1 and
File2.
Any help would be appreciated.
Jim Kress
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Received on Sat Apr 08 2017 - 12:00:02 PDT
