[AMBER] ptraj hbonds

From: Mary Varughese <maryvj1985.gmail.com>
Date: Wed, 5 Apr 2017 16:03:55 +0530

Hi


when calculating H-bonds with ptraj, what type of error is given in
the bracket of distances and angles of H-bonds; (std deviation or
error )? i mean how is it calculated. Could i give it as error in
results?

| 83 :3.N3 | 684 :22.H1 683 :22.N1 | 99.99 2.955 (
0.09) 15.58 ( 8.52) 9999.5 ( 204.5) 10204
|..................................................|

Also, in X-H---A, is the given distance d(H---A) or d(X---A)?
                            could i take hbond distance upto 3.5 angstrom ?

Thanking you
mary

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Received on Wed Apr 05 2017 - 04:00:02 PDT
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