On Tue, Apr 04, 2017, Ramin Salimi wrote:
>
> But I am a bit confused. When we calculate the total free energy of our
> system, we write it as Gtot = Eintra + Gsolv - TSintra , and we want to
> calculate the internal energy, we cannot unambiguously separate out the
> two contributions Eintra + Gsolv . Am I right? If so, can we say that
> the EGB shown in the output file of the GB/SA method is the sum of these
> two terms? or it is just Gsolv? If it just the Gsolv, how can we find
> the contributions solely from internal energy?
You can't separate EGB = Gsolv into internal energy and entropy components.
(Not sure if this answers your question or not....)
....dac
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Apr 04 2017 - 19:00:04 PDT