[[0, 1], [1, 13], [2, 1], [3, 12], [4, 3], [5, 6], [6, 7], [7, 8], [9, 7], [10, 7], [11, 6], [12, 11], [13, 12], [14, 13], [15, 14], [16, 21], [17, 18], [18, 19], [19, 20], [20, 21], [21, 22], [22, 14], [23, 22], [24, 2], [25, 4], [26, 5], [27, 11], [28, 15], [29, 17], [30, 18], [31, 19], [32, 20]] ('block stast, end: ', 0, 60000) inside dummy.. Filename: dummy-code.py Line # Mem usage Increment Line Contents ================================================ 142 158.3 MiB 0.0 MiB @profile 143 def dummy(): 144 158.3 MiB 0.0 MiB print("inside dummy..") ('block stast, end: ', 60000, 120000) inside dummy.. Filename: dummy-code.py Line # Mem usage Increment Line Contents ================================================ 142 177.1 MiB 0.0 MiB @profile 143 def dummy(): 144 177.1 MiB 0.0 MiB print("inside dummy..") ('block stast, end: ', 120000, 180000) inside dummy.. Filename: dummy-code.py Line # Mem usage Increment Line Contents ================================================ 142 195.9 MiB 0.0 MiB @profile 143 def dummy(): 144 195.9 MiB 0.0 MiB print("inside dummy..") ('block stast, end: ', 180000, 240000) inside dummy.. Filename: dummy-code.py Line # Mem usage Increment Line Contents ================================================ 142 229.4 MiB 0.0 MiB @profile 143 def dummy(): 144 229.4 MiB 0.0 MiB print("inside dummy..") ('block stast, end: ', 240000, 300000) inside dummy.. Filename: dummy-code.py Line # Mem usage Increment Line Contents ================================================ 142 248.0 MiB 0.0 MiB @profile 143 def dummy(): 144 248.0 MiB 0.0 MiB print("inside dummy..") ('block stast, end: ', 300000, 360000) inside dummy.. Filename: dummy-code.py Line # Mem usage Increment Line Contents ================================================ 142 266.8 MiB 0.0 MiB @profile 143 def dummy(): 144 266.8 MiB 0.0 MiB print("inside dummy..") ('block stast, end: ', 360000, 420000) inside dummy.. Filename: dummy-code.py Line # Mem usage Increment Line Contents ================================================ 142 285.7 MiB 0.0 MiB @profile 143 def dummy(): 144 285.7 MiB 0.0 MiB print("inside dummy..") ('block stast, end: ', 420000, 480000) inside dummy.. Filename: dummy-code.py Line # Mem usage Increment Line Contents ================================================ 142 304.5 MiB 0.0 MiB @profile 143 def dummy(): 144 304.5 MiB 0.0 MiB print("inside dummy..") ('block stast, end: ', 480000, 540000) inside dummy.. Filename: dummy-code.py Line # Mem usage Increment Line Contents ================================================ 142 323.3 MiB 0.0 MiB @profile 143 def dummy(): 144 323.3 MiB 0.0 MiB print("inside dummy..") ('block stast, end: ', 540000, 600000) inside dummy.. Filename: dummy-code.py Line # Mem usage Increment Line Contents ================================================ 142 342.3 MiB 0.0 MiB @profile 143 def dummy(): 144 342.3 MiB 0.0 MiB print("inside dummy..") ('block stast, end: ', 600000, 660000) inside dummy.. Filename: dummy-code.py Line # Mem usage Increment Line Contents ================================================ 142 361.0 MiB 0.0 MiB @profile 143 def dummy(): 144 361.0 MiB 0.0 MiB print("inside dummy..") ('block stast, end: ', 660000, 720000) inside dummy.. Filename: dummy-code.py Line # Mem usage Increment Line Contents ================================================ 142 379.8 MiB 0.0 MiB @profile 143 def dummy(): 144 379.8 MiB 0.0 MiB print("inside dummy..") ('block stast, end: ', 720000, 780000) inside dummy.. Filename: dummy-code.py Line # Mem usage Increment Line Contents ================================================ 142 398.6 MiB 0.0 MiB @profile 143 def dummy(): 144 398.6 MiB 0.0 MiB print("inside dummy..") ('block stast, end: ', 780000, 840000) inside dummy.. Filename: dummy-code.py Line # Mem usage Increment Line Contents ================================================ 142 417.4 MiB 0.0 MiB @profile 143 def dummy(): 144 417.4 MiB 0.0 MiB print("inside dummy..") ('block stast, end: ', 840000, 900000) inside dummy.. Filename: dummy-code.py Line # Mem usage Increment Line Contents ================================================ 142 436.3 MiB 0.0 MiB @profile 143 def dummy(): 144 436.3 MiB 0.0 MiB print("inside dummy..") ('block stast, end: ', 900000, 960000) inside dummy.. Filename: dummy-code.py Line # Mem usage Increment Line Contents ================================================ 142 455.2 MiB 0.0 MiB @profile 143 def dummy(): 144 455.2 MiB 0.0 MiB print("inside dummy..") ('block stast, end: ', 960000, 1000000) inside dummy.. Filename: dummy-code.py Line # Mem usage Increment Line Contents ================================================ 142 446.4 MiB 0.0 MiB @profile 143 def dummy(): 144 446.4 MiB 0.0 MiB print("inside dummy..") Filename: dummy-code.py Line # Mem usage Increment Line Contents ================================================ 146 75.8 MiB 0.0 MiB @profile 147 def process_traj(traj, bnd_list, chunk_sz=60000): 148 75.8 MiB 0.0 MiB chunk_id = 0 149 446.4 MiB 370.6 MiB for chunk in traj.iterchunk(chunk_sz, start=0, stop=-1): 150 440.2 MiB -6.3 MiB chunk_end = (chunk_id + 1) * chunk_sz if (chunk_id + 1) * chunk_sz < traj.n_frames else traj.n_frames 151 440.2 MiB 0.0 MiB print("block stast, end: ", chunk_id * chunk_sz, chunk_end) 152 440.2 MiB 0.0 MiB if chunk_end - chunk_id * chunk_sz > 0: 153 455.2 MiB 15.0 MiB bonds_val = pt.distance(chunk, bnd_list, dtype='ndarray') 154 455.2 MiB 0.0 MiB dummy() 155 455.2 MiB 0.0 MiB chunk_id += 1 156 455.2 MiB 0.0 MiB gc.collect()