Checking for updates...
Checking for available patches online. This may take a few seconds...

Available AmberTools 16 patches:

No patches available

Compatible Python found! Using /usr/bin/python

Testing the /usr/bin/clang compiler:
     /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE  -o testp testp.c
OK

Testing the /usr/bin/clang++ compiler:
     /usr/bin/clang++ -fPIC -o testp testp.cpp
OK

Testing the gfortran compiler:
     gfortran -fPIC -O0 -o testp testp.f 
OK

Testing mixed C/Fortran compilation:
     /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE  -c -o testp.c.o testp.c
     gfortran -fPIC -O0 -c -o testp.f.o testp.f
     /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c.o testp.f.o -lgfortran -w 
OK

Testing pointer size:
     /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE  -o test_pointer_size test_pointer_size.c
Detected 64 bit operating system.

Testing flex: OK

Checking NetCDF...
	Using bundled NetCDF library.
	Using existing NetCDF in '/home/redantlabs/projects/amber16'

Checking for zlib: 
     /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ  -lz -o testp testp.c
OK

Checking for libbz2: 
     /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ  -lbz2 -o testp testp.c
OK

Configuring fftw-3.3 (may be time-consuming)...

    fftw-3.3 configure succeeded.

Configuring XBLAS (may be time-consuming)...

    XBLAS configure succeeded.

Configuring MTK++ (may be time-consuming)...

    MTK++-0.2.0 configure succeeded.
 
The configuration file, config.h, was successfully created.
 
--------------------------------------------------------------------------------
Environment resource files are provided to set the proper environment
variables to use AMBER and AmberTools. This is required to run any Python
programs (like MMPBSA.py, ParmEd, MCPB.py, and pytraj)

If you use a Bourne shell (e.g., bash, sh, zsh, etc.), source the
/home/redantlabs/projects/amber16/amber.sh file in your shell. Consider adding the line
  test -f /home/redantlabs/projects/amber16/amber.sh && source /home/redantlabs/projects/amber16/amber.sh
to your startup file (e.g., ~/.bashrc)

If you use a C shell (e.g., csh, tcsh), source the
/home/redantlabs/projects/amber16/amber.csh file in your shell. Consider adding the line
  test -f /home/redantlabs/projects/amber16/amber.csh && source /home/redantlabs/projects/amber16/amber.csh
to your startup file (e.g., ~/.cshrc)

(You need to do the above before running 'make install')
--------------------------------------------------------------------------------

The next step is to source the amber.sh or amber.csh file
  (if needed, see above), and then to type 'make install'

Cleaning the src directories. This may take a few moments.
Configure complete.