cd AmberTools/src && make install make[1]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src' (cd mtkpp && make && make -j 1 install ) make[2]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/mtkpp' make all-recursive make[3]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/mtkpp' Making all in src make[4]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src' Making all in Diagnostics make[5]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src/Diagnostics' /bin/sh ../../libtool --tag=CXX --mode=compile /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I../.. -I/home/redantlabs/projects/amber16/AmberTools/src/boost-1.38.0 -I./.. -fPIC -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -MT MTKException.lo -MD -MP -MF .deps/MTKException.Tpo -c -o MTKException.lo MTKException.cpp libtool: compile: /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I../.. -I/home/redantlabs/projects/amber16/AmberTools/src/boost-1.38.0 -I./.. -fPIC -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -MT MTKException.lo -MD -MP -MF .deps/MTKException.Tpo -c MTKException.cpp -o MTKException.o mv -f .deps/MTKException.Tpo .deps/MTKException.Plo /bin/sh ../../libtool --tag=CXX --mode=link /usr/bin/clang++ -fPIC -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -o libDiagnostics.la -rpath /home/redantlabs/projects/amber16/lib MTKException.lo libtool: link: rm -fr .libs/libDiagnostics.a .libs/libDiagnostics.la .libs/libDiagnostics.lai rm: cannot remove '.libs/libDiagnostics.a': Permission denied rm: cannot remove '.libs/libDiagnostics.la': Permission denied rm: cannot remove '.libs/libDiagnostics.lai': Permission denied libtool: link: ar cru .libs/libDiagnostics.a MTKException.o ar: `u' modifier ignored since `D' is the default (see `U') ar: could not create temporary file whilst writing archive: No more archived files Makefile:314: recipe for target 'libDiagnostics.la' failed make[5]: *** [libDiagnostics.la] Error 1 make[5]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src/Diagnostics' Makefile:282: recipe for target 'all-recursive' failed make[4]: *** [all-recursive] Error 1 make[4]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src' Makefile:389: recipe for target 'all-recursive' failed make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/mtkpp' Makefile:298: recipe for target 'all' failed make[2]: *** [all] Error 2 make[2]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/mtkpp' Makefile:229: recipe for target 'install_mtkpp' failed make[1]: [install_mtkpp] Error 2 (ignored) (cd mtkpp/tests && make create ) make[2]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/tests' /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I.. -I/home/redantlabs/projects/amber16/AmberTools/src/boost-1.38.0 -I/include -I../src -I../include -I../src/eigen3b2 -fPIC -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -MT fileFormatsTest.o -MD -MP -MF .deps/fileFormatsTest.Tpo -c -o fileFormatsTest.o fileFormatsTest.cpp mv -f .deps/fileFormatsTest.Tpo .deps/fileFormatsTest.Po /bin/sh ../libtool --tag=CXX --mode=link /usr/bin/clang++ -fPIC -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -L/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src/Diagnostics -L/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src/Molecule -L/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src/Log -L/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src/Graph -L/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src/GA -L/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src/Statistics -L/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src/Parsers -L/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src/tinyxml -o fileFormatsTest fileFormatsTest.o -lDiagnostics -lMolecule -lLog -lGraph -lGA -lStatistics -lParsers -ltinyxml -lz libtool: link: /usr/bin/clang++ -fPIC -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -o fileFormatsTest fileFormatsTest.o -L/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src/Diagnostics -L/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src/Molecule -L/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src/Log -L/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src/Graph -L/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src/GA -L/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src/Statistics -L/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src/Parsers -L/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/src/tinyxml -lDiagnostics -lMolecule -lLog -lGraph -lGA -lStatistics -lParsers -ltinyxml -lz /usr/bin/ld: cannot find -lDiagnostics /usr/bin/ld: cannot find -lMolecule /usr/bin/ld: cannot find -lLog /usr/bin/ld: cannot find -lGraph /usr/bin/ld: cannot find -lGA /usr/bin/ld: cannot find -lStatistics /usr/bin/ld: cannot find -lParsers /usr/bin/ld: cannot find -ltinyxml clang: error: linker command failed with exit code 1 (use -v to see invocation) Makefile:416: recipe for target 'fileFormatsTest' failed make[2]: *** [fileFormatsTest] Error 1 make[2]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/mtkpp/tests' Makefile:229: recipe for target 'install_mtkpp' failed make[1]: [install_mtkpp] Error 2 (ignored) Starting installation of AmberTools16 serial at Thu Mar 9 15:10:27 CET 2017. (cd ucpp-1.3 && make install ) make[2]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/ucpp-1.3' /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -DSTAND_ALONE mem.c /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -DSTAND_ALONE nhash.c /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -DSTAND_ALONE cpp.c /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -DSTAND_ALONE lexer.c /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -DSTAND_ALONE assert.c /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -DSTAND_ALONE macro.c /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -DSTAND_ALONE eval.c /usr/bin/clang -o ucpp mem.o nhash.o cpp.o lexer.o assert.o macro.o eval.o mv ucpp /home/redantlabs/projects/amber16/bin mv: replace ‘/home/redantlabs/projects/amber16/bin/ucpp’, overriding mode 0755 (rwxr-xr-x)? y make[2]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/ucpp-1.3' (cd byacc && make install ) make[2]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/byacc' /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -c -o closure.o closure.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -c -o error.o error.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -c -o lalr.o lalr.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -c -o lr0.o lr0.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -c -o main.o main.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -c -o mkpar.o mkpar.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -c -o output.o output.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -c -o reader.o reader.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -c -o skeleton.o skeleton.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -c -o symtab.o symtab.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -c -o verbose.o verbose.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -c -o warshall.o warshall.c main.o: In function `create_file_names': main.c:(.text+0x841): warning: the use of `mktemp' is dangerous, better use `mkstemp' make[2]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/byacc' (cd arpack && make install ); make[2]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/arpack' gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o ivout.o ivout.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dvout.o dvout.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgetv0.o dgetv0.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaqrb.o dlaqrb.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dnaitr.o dnaitr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dnapps.o dnapps.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dnaup2.o dnaup2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dnaupd.o dnaupd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dnconv.o dnconv.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dneigh.o dneigh.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dmout.o dmout.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dneupd.o dneupd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dngets.o dngets.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsaitr.o dsaitr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsapps.o dsapps.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsaup2.o dsaup2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsaupd.o dsaupd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsconv.o dsconv.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dseigt.o dseigt.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsesrt.o dsesrt.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dseupd.o dseupd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsgets.o dsgets.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsortc.o dsortc.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsortr.o dsortr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dstatn.o dstatn.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dstats.o dstats.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dstqrb.o dstqrb.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsarpack.o dsarpack.f dsarpack.f:424.3: 12 go to 11 1 dsarpack.f:199.15: go to (12,18) label 2 Warning: Legacy Extension: Label at (1) is not in the same block as the GOTO statement at (2) dsarpack.f:545.3: 18 go to 17 1 dsarpack.f:199.18: go to (12,18) label 2 Warning: Legacy Extension: Label at (1) is not in the same block as the GOTO statement at (2) /usr/bin/clang -c -O3 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o wallclock.o wallclock.c ar rv libarpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o ar: creating libarpack.a a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib libarpack.a mv libarpack.a /home/redantlabs/projects/amber16/lib mv: replace ‘/home/redantlabs/projects/amber16/lib/libarpack.a’, overriding mode 0644 (rw-r--r--)? y make[2]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/arpack' (cd lapack && make install ) make[2]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/lapack' gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsyev.o dsyev.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsygv.o dsygv.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlansy.o dlansy.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsytrd.o dsytrd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dorgtr.o dorgtr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsteqr.o dsteqr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsterf.o dsterf.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlascl.o dlascl.f gfortran -c -O0 -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlamch.o dlamch.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o ilaenv.o ilaenv.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlassq.o dlassq.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsytd2.o dsytd2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlatrd.o dlatrd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dorgql.o dorgql.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dorgqr.o dorgqr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlasrt.o dlasrt.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaset.o dlaset.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlanst.o dlanst.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaev2.o dlaev2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlasr.o dlasr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlapy2.o dlapy2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlartg.o dlartg.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlae2.o dlae2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dorg2r.o dorg2r.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarft.o dlarft.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarfb.o dlarfb.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dorg2l.o dorg2l.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarfg.o dlarfg.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarf.o dlarf.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dspev.o dspev.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlansp.o dlansp.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsptrd.o dsptrd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dopgtr.o dopgtr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dppsv.o dppsv.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dspsv.o dspsv.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgeev.o dgeev.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsptrs.o dsptrs.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsptrf.o dsptrf.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dpptrs.o dpptrs.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dpptrf.o dpptrf.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgebak.o dgebak.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dtrevc.o dtrevc.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlacpy.o dlacpy.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dhseqr.o dhseqr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dorghr.o dorghr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgehrd.o dgehrd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgebal.o dgebal.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlange.o dlange.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlabad.o dlabad.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlahqr.o dlahqr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarfx.o dlarfx.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlanhs.o dlanhs.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaln2.o dlaln2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgehd2.o dgehd2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlahrd.o dlahrd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlanv2.o dlanv2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dladiv.o dladiv.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgerq2.o dgerq2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dorm2r.o dorm2r.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarnv.o dlarnv.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgeqr2.o dgeqr2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaruv.o dlaruv.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dspevd.o dspevd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dstedc.o dstedc.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dopmtr.o dopmtr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaed0.o dlaed0.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaed1.o dlaed1.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaed7.o dlaed7.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaeda.o dlaeda.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaed8.o dlaed8.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaed9.o dlaed9.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlamrg.o dlamrg.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaed2.o dlaed2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaed3.o dlaed3.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dpotrs.o dpotrs.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dpotrf.o dpotrf.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsygst.o dsygst.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dpotf2.o dpotf2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsygs2.o dsygs2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dposv.o dposv.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaebz.o dlaebz.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlagtf.o dlagtf.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlagts.o dlagts.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dormqr.o dormqr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dormql.o dormql.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dorm2l.o dorm2l.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaed4.o dlaed4.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaed5.o dlaed5.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaed6.o dlaed6.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o ieeeck.o ieeeck.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsyevx.o dsyevx.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsyevd.o dsyevd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dstebz.o dstebz.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dstein.o dstein.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dormtr.o dormtr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zheev.o zheev.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o lsame.o lsame.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zlanhe.o zlanhe.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zlascl.o zlascl.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zhetrd.o zhetrd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zungtr.o zungtr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zsteqr.o zsteqr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zlassq.o zlassq.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zlatrd.o zlatrd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zhetd2.o zhetd2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zungql.o zungql.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zungqr.o zungqr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zlasr.o zlasr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zlaset.o zlaset.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zlacgv.o zlacgv.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zlarfg.o zlarfg.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zung2l.o zung2l.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zlarft.o zlarft.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zlarfb.o zlarfb.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zung2r.o zung2r.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlapy3.o dlapy3.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zladiv.o zladiv.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zlarf.o zlarf.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgesvd.o dgesvd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgebrd.o dgebrd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgebd2.o dgebd2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlabrd.o dlabrd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dorgbr.o dorgbr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dbdsqr.o dbdsqr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgeqrf.o dgeqrf.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dormbr.o dormbr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgelqf.o dgelqf.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dorglq.o dorglq.f gfortran -c -O3 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gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlasq3.o dlasq3.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlasq4.o dlasq4.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlasq5.o dlasq5.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dorml2.o dorml2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlasq6.o dlasq6.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgesv.o dgesv.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgetrs.o dgetrs.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaswp.o dlaswp.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgetrf.o dgetrf.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgerfs.o dgerfs.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgetf2.o dgetf2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsysv.o dsysv.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsytrs.o dsytrs.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsytrf.o dsytrf.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlasyf.o dlasyf.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsytf2.o dsytf2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgelss.o dgelss.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgelsd.o dgelsd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlalsd.o dlalsd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlasdq.o dlasdq.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlasda.o dlasda.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlalsa.o dlalsa.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlasd6.o dlasd6.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlals0.o dlals0.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlasdt.o dlasdt.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlasd7.o dlasd7.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlasd8.o dlasd8.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlasd4.o dlasd4.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlasd5.o dlasd5.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlacn2.o dlacn2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgelsy.o dgelsy.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaic1.o dlaic1.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dtzrzf.o dtzrzf.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dormrz.o dormrz.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarzt.o dlarzt.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarzb.o dlarzb.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlatrz.o dlatrz.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dormr3.o dormr3.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgeqp3.o dgeqp3.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarz.o dlarz.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaqps.o dlaqps.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaqp2.o dlaqp2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dspevx.o dspevx.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsyevr.o dsyevr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dstegr.o dstegr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarrv.o dlarrv.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarre.o dlarre.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarrb.o dlarrb.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlar1v.o dlar1v.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarrf.o dlarrf.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dggev.o dggev.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dhgeqz.o dhgeqz.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgghrd.o dgghrd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dtgevc.o dtgevc.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dggbak.o dggbak.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dggbal.o dggbal.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlag2.o dlag2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o disnan.o disnan.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaisnan.o dlaisnan.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarfp.o dlarfp.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dstemr.o dstemr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarra.o dlarra.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarrc.o dlarrc.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarrd.o dlarrd.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarrj.o dlarrj.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarrk.o dlarrk.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlarrr.o dlarrr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaneg.o dlaneg.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaqr0.o dlaqr0.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaqr1.o dlaqr1.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaqr2.o dlaqr2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaqr3.o dlaqr3.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaqr4.o dlaqr4.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaqr5.o dlaqr5.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlahr2.o dlahr2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dormhr.o dormhr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dtrexc.o dtrexc.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaexc.o dlaexc.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlasy2.o dlasy2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o iparmq.o iparmq.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o iladlc.o iladlc.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o iladlr.o iladlr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlatrs.o dlatrs.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o drscl.o drscl.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlantr.o dlantr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgecon.o dgecon.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgeequ.o dgeequ.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlaqge.o dlaqge.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgesvx.o dgesvx.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o chla_transtype.o chla_transtype.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dla_wwaddw.o dla_wwaddw.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dla_geamv.o dla_geamv.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dla_lin_berr.o dla_lin_berr.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o ilatrans.o ilatrans.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dla_gercond.o dla_gercond.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o ilaprec.o ilaprec.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dla_gerfsx_extended.o dla_gerfsx_extended.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dla_rpvgrw.o dla_rpvgrw.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgerfsx.o dgerfsx.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dlascl2.o dlascl2.f gfortran -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgeequb.o dgeequb.f ar rv liblapack.a dsyev.o dsygv.o dlansy.o dsytrd.o dorgtr.o dsteqr.o dsterf.o dlascl.o dlamch.o ilaenv.o dlassq.o dsytd2.o dlatrd.o dorgql.o dorgqr.o dlasrt.o dlaset.o dlanst.o dlaev2.o dlasr.o dlapy2.o dlartg.o dlae2.o dorg2r.o dlarft.o dlarfb.o dorg2l.o dlarfg.o dlarf.o dspev.o dlansp.o dsptrd.o dopgtr.o dppsv.o dspsv.o dgeev.o dsptrs.o dsptrf.o dpptrs.o dpptrf.o dgebak.o dtrevc.o dlacpy.o dhseqr.o dorghr.o dgehrd.o dgebal.o dlange.o dlabad.o dlahqr.o dlarfx.o dlanhs.o dlaln2.o dgehd2.o dlahrd.o dlanv2.o dladiv.o dgerq2.o dorm2r.o dlarnv.o dgeqr2.o dlaruv.o dspevd.o dstedc.o dopmtr.o dlaed0.o dlaed1.o dlaed7.o dlaeda.o dlaed8.o dlaed9.o dlamrg.o dlaed2.o dlaed3.o dpotrs.o dpotrf.o dsygst.o dpotf2.o dsygs2.o dposv.o dlaebz.o dlagtf.o dlagts.o dormqr.o dormql.o dorm2l.o dlaed4.o dlaed5.o dlaed6.o ieeeck.o dsyevx.o dsyevd.o dstebz.o dstein.o dormtr.o zheev.o lsame.o zlanhe.o zlascl.o zhetrd.o zungtr.o zsteqr.o zlassq.o zlatrd.o zhetd2.o zungql.o zungqr.o zlasr.o zlaset.o zlacgv.o zlarfg.o zung2l.o zlarft.o zlarfb.o zung2r.o dlapy3.o zladiv.o zlarf.o dgesvd.o dgebrd.o dgebd2.o dlabrd.o dorgbr.o dbdsqr.o dgeqrf.o dormbr.o dgelqf.o dorglq.o dlas2.o dlasq1.o dlasv2.o dgelq2.o dorgl2.o dlasq2.o dormlq.o dlasq3.o dlasq4.o dlasq5.o dorml2.o dlasq6.o dgesv.o dgetrs.o dlaswp.o dgetrf.o dgerfs.o dgetf2.o dsysv.o dsytrs.o dsytrf.o dlasyf.o dsytf2.o dgelss.o dgelsd.o dlalsd.o dlasdq.o dlasda.o dlalsa.o dlasd6.o dlals0.o dlasdt.o dlasd7.o dlasd8.o dlasd4.o dlasd5.o dlacn2.o dgelsy.o dlaic1.o dtzrzf.o dormrz.o dlarzt.o dlarzb.o dlatrz.o dormr3.o dgeqp3.o dlarz.o dlaqps.o dlaqp2.o dspevx.o dsyevr.o dstegr.o dlarrv.o dlarre.o dlarrb.o dlar1v.o dlarrf.o dggev.o dhgeqz.o dgghrd.o dtgevc.o dggbak.o dggbal.o dlag2.o disnan.o dlaisnan.o dlarfp.o dstemr.o dlarra.o dlarrc.o dlarrd.o dlarrj.o dlarrk.o dlarrr.o dlaneg.o dlaqr0.o dlaqr1.o dlaqr2.o dlaqr3.o dlaqr4.o dlaqr5.o dlahr2.o dormhr.o dtrexc.o dlaexc.o dlasy2.o iparmq.o iladlc.o iladlr.o dlatrs.o drscl.o dlantr.o dgecon.o dgeequ.o dlaqge.o dgesvx.o chla_transtype.o dla_wwaddw.o dla_geamv.o dla_lin_berr.o ilatrans.o dla_gercond.o ilaprec.o dla_gerfsx_extended.o dla_rpvgrw.o dgerfsx.o dlascl2.o dgeequb.o ar: creating liblapack.a a - dsyev.o a - dsygv.o a - dlansy.o a - dsytrd.o a - dorgtr.o a - dsteqr.o a - dsterf.o a - dlascl.o a - dlamch.o a - ilaenv.o a - dlassq.o a - dsytd2.o a - dlatrd.o a - dorgql.o a - dorgqr.o a - dlasrt.o a - dlaset.o a - dlanst.o a - dlaev2.o a - dlasr.o a - dlapy2.o a - dlartg.o a - dlae2.o a - dorg2r.o a - dlarft.o a - dlarfb.o a - dorg2l.o a - dlarfg.o a - dlarf.o a - dspev.o a - dlansp.o a - dsptrd.o a - dopgtr.o a - dppsv.o a - dspsv.o a - dgeev.o a - dsptrs.o a - dsptrf.o a - dpptrs.o a - dpptrf.o a - dgebak.o a - dtrevc.o a - dlacpy.o a - dhseqr.o a - dorghr.o a - dgehrd.o a - dgebal.o a - dlange.o a - dlabad.o a - dlahqr.o a - dlarfx.o a - dlanhs.o a - dlaln2.o a - dgehd2.o a - dlahrd.o a - dlanv2.o a - dladiv.o a - dgerq2.o a - dorm2r.o a - dlarnv.o a - dgeqr2.o a - dlaruv.o a - dspevd.o a - dstedc.o a - dopmtr.o a - dlaed0.o a - dlaed1.o a - dlaed7.o a - dlaeda.o a - dlaed8.o a - dlaed9.o a - dlamrg.o a - dlaed2.o a - dlaed3.o a - dpotrs.o a - dpotrf.o a - dsygst.o a - dpotf2.o a - dsygs2.o a - dposv.o a - dlaebz.o a - dlagtf.o a - dlagts.o a - dormqr.o a - dormql.o a - dorm2l.o a - dlaed4.o a - dlaed5.o a - dlaed6.o a - ieeeck.o a - dsyevx.o a - dsyevd.o a - dstebz.o a - dstein.o a - dormtr.o a - zheev.o a - lsame.o a - zlanhe.o a - zlascl.o a - zhetrd.o a - zungtr.o a - zsteqr.o a - zlassq.o a - zlatrd.o a - zhetd2.o a - zungql.o a - zungqr.o a - zlasr.o a - zlaset.o a - zlacgv.o a - zlarfg.o a - zung2l.o a - zlarft.o a - zlarfb.o a - zung2r.o a - dlapy3.o a - zladiv.o a - zlarf.o a - dgesvd.o a - dgebrd.o a - dgebd2.o a - dlabrd.o a - dorgbr.o a - dbdsqr.o a - dgeqrf.o a - dormbr.o a - dgelqf.o a - dorglq.o a - dlas2.o a - dlasq1.o a - dlasv2.o a - dgelq2.o a - dorgl2.o a - dlasq2.o a - dormlq.o a - dlasq3.o a - dlasq4.o a - dlasq5.o a - dorml2.o a - dlasq6.o a - dgesv.o a - dgetrs.o a - dlaswp.o a - dgetrf.o a - dgerfs.o a - dgetf2.o a - dsysv.o a - dsytrs.o a - dsytrf.o a - dlasyf.o a - dsytf2.o a - dgelss.o a - dgelsd.o a - dlalsd.o a - dlasdq.o a - dlasda.o a - dlalsa.o a - dlasd6.o a - dlals0.o a - dlasdt.o a - dlasd7.o a - dlasd8.o a - dlasd4.o a - dlasd5.o a - dlacn2.o a - dgelsy.o a - dlaic1.o a - dtzrzf.o a - dormrz.o a - dlarzt.o a - dlarzb.o a - dlatrz.o a - dormr3.o a - dgeqp3.o a - dlarz.o a - dlaqps.o a - dlaqp2.o a - dspevx.o a - dsyevr.o a - dstegr.o a - dlarrv.o a - dlarre.o a - dlarrb.o a - dlar1v.o a - dlarrf.o a - dggev.o a - dhgeqz.o a - dgghrd.o a - dtgevc.o a - dggbak.o a - dggbal.o a - dlag2.o a - disnan.o a - dlaisnan.o a - dlarfp.o a - dstemr.o a - dlarra.o a - dlarrc.o a - dlarrd.o a - dlarrj.o a - dlarrk.o a - dlarrr.o a - dlaneg.o a - dlaqr0.o a - dlaqr1.o a - dlaqr2.o a - dlaqr3.o a - dlaqr4.o a - dlaqr5.o a - dlahr2.o a - dormhr.o a - dtrexc.o a - dlaexc.o a - dlasy2.o a - iparmq.o a - iladlc.o a - iladlr.o a - dlatrs.o a - drscl.o a - dlantr.o a - dgecon.o a - dgeequ.o a - dlaqge.o a - dgesvx.o a - chla_transtype.o a - dla_wwaddw.o a - dla_geamv.o a - dla_lin_berr.o a - ilatrans.o a - dla_gercond.o a - ilaprec.o a - dla_gerfsx_extended.o a - dla_rpvgrw.o a - dgerfsx.o a - dlascl2.o a - dgeequb.o ranlib liblapack.a mv liblapack.a /home/redantlabs/projects/amber16/lib mv: replace ‘/home/redantlabs/projects/amber16/lib/liblapack.a’, overriding mode 0644 (rw-r--r--)? y make[2]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/lapack' (cd blas && make install ) make[2]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/blas' gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dasum.o dasum.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o daxpy.o daxpy.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dcabs1.o dcabs1.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dcopy.o dcopy.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o ddot.o ddot.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgbmv.o dgbmv.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgemm.o dgemm.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgemv.o dgemv.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dger.o dger.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dnrm2.o dnrm2.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o drot.o drot.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o drotg.o drotg.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsbmv.o dsbmv.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dscal.o dscal.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dspmv.o dspmv.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dspr.o dspr.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dspr2.o dspr2.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dswap.o dswap.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsymm.o dsymm.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsymv.o dsymv.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsyr.o dsyr.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsyr2.o dsyr2.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsyr2k.o dsyr2k.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsyrk.o dsyrk.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dtbmv.o dtbmv.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dtbsv.o dtbsv.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dtpmv.o dtpmv.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dtpsv.o dtpsv.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dtrmm.o dtrmm.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dtrmv.o dtrmv.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dtrsm.o dtrsm.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dtrsv.o dtrsv.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dummy.o dummy.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dzasum.o dzasum.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dznrm2.o dznrm2.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o idamax.o idamax.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o isamax.o isamax.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o lsame.o lsame.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o xerbla.o xerbla.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o scopy.o scopy.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o sswap.o sswap.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o sscal.o sscal.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o sasum.o sasum.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o snrm2.o snrm2.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o sdot.o sdot.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o ssyr2k.o ssyr2k.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o saxpy.o saxpy.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o sgemv.o sgemv.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o ssyr2.o ssyr2.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o ssymv.o ssymv.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o sgemm.o sgemm.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o strmm.o strmm.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o strmv.o strmv.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o sger.o sger.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zher2k.o zher2k.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zswap.o zswap.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zgemv.o zgemv.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zhemv.o zhemv.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zscal.o zscal.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zdotc.o zdotc.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zaxpy.o zaxpy.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zher2.o zher2.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zdscal.o zdscal.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o ztrmv.o ztrmv.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zcopy.o zcopy.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o ztrmm.o ztrmm.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zgemm.o zgemm.f gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o zgerc.o zgerc.f ar rv libblas.a dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o dsbmv.o dscal.o dspmv.o dspr.o dspr2.o dswap.o dsymm.o dsymv.o dsyr.o dsyr2.o dsyr2k.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dummy.o dzasum.o dznrm2.o idamax.o isamax.o lsame.o xerbla.o scopy.o sswap.o sscal.o sasum.o snrm2.o sdot.o ssyr2k.o saxpy.o sgemv.o ssyr2.o ssymv.o sgemm.o strmm.o strmv.o sger.o zher2k.o zswap.o zgemv.o zhemv.o zscal.o zdotc.o zaxpy.o zher2.o zdscal.o ztrmv.o zcopy.o ztrmm.o zgemm.o zgerc.o ar: creating libblas.a a - dasum.o a - daxpy.o a - dcabs1.o a - dcopy.o a - ddot.o a - dgbmv.o a - dgemm.o a - dgemv.o a - dger.o a - dnrm2.o a - drot.o a - drotg.o a - dsbmv.o a - dscal.o a - dspmv.o a - dspr.o a - dspr2.o a - dswap.o a - dsymm.o a - dsymv.o a - dsyr.o a - dsyr2.o a - dsyr2k.o a - dsyrk.o a - dtbmv.o a - dtbsv.o a - dtpmv.o a - dtpsv.o a - dtrmm.o a - dtrmv.o a - dtrsm.o a - dtrsv.o a - dummy.o a - dzasum.o a - dznrm2.o a - idamax.o a - isamax.o a - lsame.o a - xerbla.o a - scopy.o a - sswap.o a - sscal.o a - sasum.o a - snrm2.o a - sdot.o a - ssyr2k.o a - saxpy.o a - sgemv.o a - ssyr2.o a - ssymv.o a - sgemm.o a - strmm.o a - strmv.o a - sger.o a - zher2k.o a - zswap.o a - zgemv.o a - zhemv.o a - zscal.o a - zdotc.o a - zaxpy.o a - zher2.o a - zdscal.o a - ztrmv.o a - zcopy.o a - ztrmm.o a - zgemm.o a - zgerc.o ranlib libblas.a mv libblas.a /home/redantlabs/projects/amber16/lib mv: replace ‘/home/redantlabs/projects/amber16/lib/libblas.a’, overriding mode 0644 (rw-r--r--)? y make[2]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/blas' (cd c9x-complex && make skip ) make[2]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/c9x-complex' using built-in (C99) complex.h functionality make[2]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/c9x-complex' (cd pbsa && make clean && make install ) make[2]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/pbsa' /bin/rm -f pbsa libpbsa.a /bin/rm -f *.o /bin/rm -f /bin/rm -f *.mod *__genmod.F90 /bin/rm -f *.d make[2]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/pbsa' make[2]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/pbsa' gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsvdc.o dsvdc.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o timer.o timer.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o memory_module.o memory_module.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o decomp.o decomp.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o parms.o parms.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pbsa.o pbsa.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o sa_driver.o sa_driver.F90 gfortran -DBINTRAJ -DEMIL -c -ffree-form -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o random.o ../lib/random.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_force.o pb_force.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o np_force.o np_force.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_read.o pb_read.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_write.o pb_write.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o getcoor.o getcoor.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o runmd.o runmd.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o runmin.o runmin.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o egb.o egb.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o force.o force.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pbsa_lib.o pbsa_lib.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_init.o pb_init.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o density.o density.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_p3m.o pb_p3m.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_fdfrc.o pb_fdfrc.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_crgview.o pb_crgview.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_lsolver.o pb_lsolver.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_nlsolver.o pb_nlsolver.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_fddrv.o pb_fddrv.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_iimdrv.o pb_iimdrv.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_bldsys.o pb_bldsys.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_mpfrc.o pb_mpfrc.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_direct.o pb_direct.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_list.o pb_list.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_fftsolv.o pb_fftsolv.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o fftw3.o fftw3.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_fft.o pb_fft.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o ene.o ene.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o locmem.o locmem.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o myopen.o myopen.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o rdparm.o rdparm.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o rgroup.o rgroup.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o rfree.o rfree.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o debug.o debug.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o iimod.o iimod.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o coed20.o coed20.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o indexg.o indexg.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o irre32.o irre32.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o phidev.o phidev.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o project.o project.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qld.o qld.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o coed6.o coed6.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o irre31.o irre31.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o miniop.o miniop.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o prodis.o prodis.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qint.o qint.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o wint.o wint.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o transf.o transf.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o curv.o curv.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o GrToPr.o GrToPr.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o jumps.o jumps.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o problem.o problem.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o IIM.o IIM.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o regular.o regular.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o gmres.o gmres.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o daxpy.o daxpy.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o ddot.o ddot.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dheqr.o dheqr.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dpigmr.o dpigmr.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dscal.o dscal.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dslui2.o dslui2.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dxlcal.o dxlcal.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dchkw.o dchkw.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dgmres.o dgmres.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dnrm2.o dnrm2.F90 dnrm2.F90:88:23: 10 ASSIGN 30 TO NEXT 1 Warning: Deleted feature: ASSIGN statement at (1) dnrm2.F90:95:19: 20 GO TO NEXT,(30, 50, 70, 110) 1 Warning: Deleted feature: Assigned GOTO statement at (1) dnrm2.F90:97:23: ASSIGN 50 TO NEXT 1 Warning: Deleted feature: ASSIGN statement at (1) dnrm2.F90:107:23: ASSIGN 70 TO NEXT 1 Warning: Deleted feature: ASSIGN statement at (1) dnrm2.F90:113:24: ASSIGN 110 TO NEXT 1 Warning: Deleted feature: ASSIGN statement at (1) gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o drlcal.o drlcal.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsilus.o dsilus.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dslui.o dslui.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o isdgmr.o isdgmr.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dcopy.o dcopy.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dhels.o dhels.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dorth.o dorth.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o ds2y.o ds2y.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dslugm.o dslugm.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsmv.o dsmv.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qs2i1d.o qs2i1d.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o d1mach.o d1mach.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o fdump.o fdump.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o i1mach.o i1mach.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o j4save.o j4save.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o xercnt.o xercnt.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o xerhlt.o xerhlt.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o xermsg.o xermsg.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o xerprn.o xerprn.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o xersve.o xersve.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o xgetua.o xgetua.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o bicg.o bicg.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dbcg.o dbcg.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dslui4.o dslui4.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsluti.o dsluti.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dsmtv.o dsmtv.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dslubc.o dslubc.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o isdbcg.o isdbcg.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_chkfrc.o pb_chkfrc.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o svdcmp.o svdcmp.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o svbksb.o svbksb.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pythag.o pythag.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_augdrv.o pb_augdrv.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o gmresX.o gmresX.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o interpX.o interpX.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o aug_iccg.o aug_iccg.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o matvec3.o matvec3.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o gen_dx_file.o gen_dx_file.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o membrane.o membrane.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o rdpqr.o rdpqr.F90 cd ../lib && make nxtsec.o random.o make[3]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/lib' gfortran -DBINTRAJ -DEMIL -c -O0 -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o nxtsec.o nxtsec.F gfortran -DBINTRAJ -DEMIL -c -ffree-form -O0 -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o random.o random.F90 make[3]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/lib' cd ../lapack && make install make[3]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/lapack' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/lapack' cd ../blas && make install make[3]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/blas' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/blas' cd ../arpack && make install make[3]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/arpack' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/arpack' gfortran -DFFTW -DBINTRAJ -DEMIL -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pbsa dsvdc.o pbsa.o pb_read.o pb_write.o getcoor.o runmd.o runmin.o force.o pbsa_lib.o pb_init.o sa_driver.o density.o np_force.o pb_force.o pb_p3m.o pb_fdfrc.o pb_crgview.o pb_fddrv.o pb_iimdrv.o pb_nlsolver.o pb_bldsys.o pb_mpfrc.o pb_direct.o pb_list.o timer.o pb_fftsolv.o pb_fft.o egb.o ene.o locmem.o myopen.o rdparm.o pb_lsolver.o decomp.o rgroup.o rfree.o debug.o coed20.o indexg.o irre32.o phidev.o project.o qld.o coed6.o irre31.o miniop.o iimod.o prodis.o qint.o wint.o transf.o curv.o GrToPr.o jumps.o problem.o IIM.o regular.o gmres.o daxpy.o ddot.o dheqr.o dpigmr.o dscal.o dslui2.o dxlcal.o dchkw.o dgmres.o dnrm2.o drlcal.o dsilus.o dslui.o isdgmr.o dcopy.o dhels.o dorth.o ds2y.o dslugm.o dsmv.o qs2i1d.o d1mach.o fdump.o i1mach.o j4save.o xercnt.o xerhlt.o xermsg.o xerprn.o xersve.o xgetua.o bicg.o dbcg.o dslui4.o dsluti.o dsmtv.o dslubc.o isdbcg.o pb_chkfrc.o svdcmp.o svbksb.o pythag.o pb_augdrv.o gmresX.o interpX.o matvec3.o gen_dx_file.o aug_iccg.o membrane.o fftw3.o parms.o memory_module.o rdpqr.o \ ../lib/nxtsec.o ../lib/random.o -lfftw3 \ -L/home/redantlabs/projects/amber16/lib -larpack -llapack -lblas -lxblas-amb /bin/mv pbsa /home/redantlabs/projects/amber16/bin /bin/mv: replace ‘/home/redantlabs/projects/amber16/bin/pbsa’, overriding mode 0755 (rwxr-xr-x)? y make[2]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/pbsa' (cd gbnsr6 && make install ) make[2]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/gbnsr6' gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o memory_module.o memory_module.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o timer.o timer.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o decomp.o decomp.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o gbnsr6.o gbnsr6.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o variable_module.o variable_module.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o sa_driver.o sa_driver.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o np_force.o np_force.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_read.o pb_read.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o egb.o egb.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o gb_read.o gb_read.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_write.o pb_write.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o getcoor.o getcoor.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o runmd.o runmd.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o runmin.o runmin.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o force.o force.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_init.o pb_init.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_exmol.o pb_exmol.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o NSR6routines.o NSR6routines.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pb_list.o pb_list.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o ene.o ene.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o locmem.o locmem.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o myopen.o myopen.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o rdparm.o rdparm.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o rgroup.o rgroup.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o rfree.o rfree.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o debug.o debug.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o svdcmp.o svdcmp.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o svbksb.o svbksb.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o parms.o parms.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o pythag.o pythag.F90 gfortran -DFFTW -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o gen_dx_file.o gen_dx_file.F90 cd ../lib && make nxtsec.o random.o make[3]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/lib' make[3]: 'nxtsec.o' is up to date. make[3]: 'random.o' is up to date. make[3]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/lib' cd ../lapack && make install make[3]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/lapack' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/lapack' cd ../blas && make install make[3]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/blas' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/blas' cd ../arpack && make install make[3]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/arpack' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/arpack' gfortran -DFFTW -DBINTRAJ -DEMIL -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o gbnsr6 gbnsr6.o pb_read.o gb_read.o pb_write.o getcoor.o runmd.o runmin.o force.o pb_init.o sa_driver.o np_force.o variable_module.o pb_exmol.o NSR6routines.o pb_list.o timer.o egb.o ene.o locmem.o myopen.o rdparm.o decomp.o rgroup.o rfree.o debug.o svdcmp.o svbksb.o parms.o pythag.o memory_module.o gen_dx_file.o \ ../lib/nxtsec.o ../lib/random.o \ -L/home/redantlabs/projects/amber16/lib -larpack -llapack -lblas -lxblas-amb /bin/mv gbnsr6 /home/redantlabs/projects/amber16/bin /bin/mv: replace ‘/home/redantlabs/projects/amber16/bin/gbnsr6’, overriding mode 0755 (rwxr-xr-x)? y make[2]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/gbnsr6' (cd cifparse && make install ) make[2]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/cifparse' flex -t cifparse.l | sed 's/yy/cifp/g' > lex.cif.c /home/redantlabs/projects/amber16/bin/yacc -v -d cifparse.y sed 's/yy/cifp/g' < y.tab.c > cifp.tab.c sed 's/yy/cifp/g' < y.tab.h > cifp.tab.h /bin/rm -f y.tab.c y.tab.h /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN lex.cif.c /usr/bin/clang -c -Dflex -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN cifp.tab.c /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN cifparse.c cifparse.c:261:29: warning: format specifies type 'int' but the argument has type 'char *' [-Wformat] fprintf(fp, "\n%c ", null_char); ~~ ^~~~~~~~~ %s cifparse.c:492:25: warning: format string contains '\0' within the string body [-Wformat] sprintf(tmpstring, " %s\0", value); ~~~~^~~ cifparse.c:498:29: warning: format string contains '\0' within the string body [-Wformat] sprintf(tmpstring, " \'%s\'\0", value); ~~~~~~~~^~~ cifparse.c:500:28: warning: format string contains '\0' within the string body [-Wformat] sprintf(tmpstring, "\'%s\'\0", value); ~~~~~~~^~~ 4 warnings generated. /bin/rm -f libcifparse.a ar rv libcifparse.a lex.cif.o cifp.tab.o cifparse.o ar: creating libcifparse.a a - lex.cif.o a - cifp.tab.o a - cifparse.o ranlib libcifparse.a mv libcifparse.a /home/redantlabs/projects/amber16/lib mv: replace ‘/home/redantlabs/projects/amber16/lib/libcifparse.a’, overriding mode 0644 (rw-r--r--)? y make[2]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/cifparse' (cd antechamber && make install ) make[2]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/antechamber' /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o am1bcc.o am1bcc.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN am1bcc.o -lm -o /home/redantlabs/projects/amber16/bin/am1bcc /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o acdoctor.o acdoctor.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN acdoctor.o -lm -o /home/redantlabs/projects/amber16/bin/acdoctor /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o antechamber.o antechamber.c In file included from antechamber.c:15: ./equatom.c:341:7: warning: comparison of array 'pathscore' equal to a null pointer is always false [-Wtautological-pointer-compare] if (pathscore == NULL) { ^~~~~~~~~ ~~~~ 1 warning generated. /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN antechamber.o \ -L/home/redantlabs/projects/amber16/lib -lcifparse -lm -o /home/redantlabs/projects/amber16/bin/antechamber /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o atomtype.o atomtype.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN atomtype.o -lm -o /home/redantlabs/projects/amber16/bin/atomtype /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o bondtype.o bondtype.c /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o ncsu-penalties.o ncsu-penalties.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN ncsu-penalties.o bondtype.o -lm -o /home/redantlabs/projects/amber16/bin/bondtype /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o charmmgen.o charmmgen.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN charmmgen.o -lm -o /home/redantlabs/projects/amber16/bin/charmmgen /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o database.o database.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN database.o -lm -o /home/redantlabs/projects/amber16/bin/database /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o espgen.o espgen.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN espgen.o -lm -o /home/redantlabs/projects/amber16/bin/espgen /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o match.o match.c match.c:215:1: warning: control may reach end of non-void function [-Wreturn-type] } ^ 1 warning generated. /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN match.o -lm -o /home/redantlabs/projects/amber16/bin/match /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o match_atomname.o match_atomname.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN match_atomname.o -lm -o /home/redantlabs/projects/amber16/bin/match_atomname /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o parmcal.o parmcal.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN parmcal.o -lm -o /home/redantlabs/projects/amber16/bin/parmcal /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o parmchk.o parmchk.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN parmchk.o -lm -o /home/redantlabs/projects/amber16/bin/parmchk /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o parmchk2.o parmchk2.c parmchk2.c:1302:53: warning: more '%' conversions than data arguments [-Wformat] sscanf(&line[4], "%s%lf%lf%lf%lf%lf%lf%lf%lf%lf%lf", ~~^ parmchk2.c:1558:8: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] tn1 = fabs(n1) + fabs(n2); ^ parmchk2.c:1558:8: note: use function 'abs' instead tn1 = fabs(n1) + fabs(n2); ^~~~ abs parmchk2.c:1558:19: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] tn1 = fabs(n1) + fabs(n2); ^ parmchk2.c:1558:19: note: use function 'abs' instead tn1 = fabs(n1) + fabs(n2); ^~~~ abs parmchk2.c:1559:8: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] tn2 = fabs(n3) + fabs(n4); ^ parmchk2.c:1559:8: note: use function 'abs' instead tn2 = fabs(n3) + fabs(n4); ^~~~ abs parmchk2.c:1559:19: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] tn2 = fabs(n3) + fabs(n4); ^ parmchk2.c:1559:19: note: use function 'abs' instead tn2 = fabs(n3) + fabs(n4); ^~~~ abs 5 warnings generated. /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN parmchk2.o -lm -o /home/redantlabs/projects/amber16/bin/parmchk2 /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o prepgen.o prepgen.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN prepgen.o -lm -o /home/redantlabs/projects/amber16/bin/prepgen /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o residuegen.o residuegen.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN residuegen.o -lm -o /home/redantlabs/projects/amber16/bin/residuegen /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o respgen.o respgen.c In file included from respgen.c:24: ./equatom.c:341:7: warning: comparison of array 'pathscore' equal to a null pointer is always false [-Wtautological-pointer-compare] if (pathscore == NULL) { ^~~~~~~~~ ~~~~ 1 warning generated. /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN respgen.o -lm -o /home/redantlabs/projects/amber16/bin/respgen /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o translate.o translate.c /usr/bin/clang -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN translate.o -lm -o /home/redantlabs/projects/amber16/bin/translate make[2]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/antechamber' (cd sqm && make install ) make[2]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/sqm' gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o file_io_dat.o file_io_dat.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o constants.o ../lib/constants.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o findmask.o findmask.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o utilitiesModule.o utilitiesModule.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qmmm_qmtheorymodule.o qmmm_qmtheorymodule.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qmmm_nml_module.o qmmm_nml_module.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o elementOrbitalIndex.o elementOrbitalIndex.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qmmm_struct_module.o qmmm_struct_module.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qmmm_vsolv_module.o qmmm_vsolv_module.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_params_module.o qm2_params_module.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qmmm_module.o qmmm_module.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o parameterReader.o parameterReader.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -DSQM -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_read_nm_and_alloc.SQM.o qm2_read_nm_and_alloc.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_module.o qm2_dftb_module.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_pm6_hof_module.o qm2_pm6_hof_module.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -DSQM -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o sqm.SQM.o sqm.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o xmin.o xmin.F90 /usr/bin/clang -c -DSQM -O3 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o xminC.o ../sff/xminC.c gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o amopen.o amopen.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o mexit.o mexit.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o assert.o assert.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o timer_dummy.o timer_dummy.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o nmlsrc.o nmlsrc.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o dh_correction_module.o dh_correction_module.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_parameters.o qm2_parameters.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -DSQM -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm_print_info.SQM.o qm_print_info.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -DSQM -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_energy.SQM.o qm2_energy.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_iterator_mod.o qm2_iterator_mod.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o slater_overlap.o slater_overlap.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o MNDOChargeSeparation.o MNDOChargeSeparation.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_fock_d.o qm2_fock_d.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o opnq_Erep.o opnq_Erep.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o opnq_Edisp.o opnq_Edisp.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o opnq_Evdw.o opnq_Evdw.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o opnq_SwitchMod.o opnq_SwitchMod.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o opnq.o opnq.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -DSQM -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_scf.SQM.o qm2_scf.F90 qm2_scf.F90:244:0: old_fock_matrix = fock_matrix ^ Warning: ‘old_fock_matrix.dim[0].ubound’ may be used uninitialized in this function [-Wmaybe-uninitialized] gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -DSQM -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_scf.SQM.o qm2_dftb_scf.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_allocate_e_repul.o qm2_allocate_e_repul.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_calc_charges.o qm2_calc_charges.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_calc_dipole.o qm2_calc_dipole.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_calc_rij_and_eqns.o qm2_calc_rij_and_eqns.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dihed.o qm2_dihed.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_fock.o qm2_fock.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o rotation.o rotation.F90 rotation.F90:17:46: private GenerateRotationMatrix, rotationMatrix, xij_saved, tolerance 1 Warning: Unused PRIVATE module variable ‘rotationmatrix’ declared at (1) [-Wunused-value] gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_get_qm_forces.o qm2_get_qm_forces.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_get_qmmm_forces.o qm2_get_qmmm_forces.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_h1elec.o qm2_h1elec.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_hcore_qmqm.o qm2_hcore_qmqm.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_hcore_qmmm.o qm2_hcore_qmmm.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_identify_peptide_links.o qm2_identify_peptide_links.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_diagonalizer_module.o qm2_diagonalizer_module.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_load_params_and_allocate.o qm2_load_params_and_allocate.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_repp.o qm2_repp.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_rotate_qmqm.o qm2_rotate_qmqm.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_core_core_repulsion.o qm2_core_core_repulsion.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_core_core_repulsion_dxyz.o qm2_core_core_repulsion_dxyz.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_setup_orb_exp.o qm2_setup_orb_exp.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_smallest_number.o qm2_smallest_number.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_fock_predict.o qm2_fock_predict.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm_gb.o qm_gb.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm_zero_charges.o qm_zero_charges.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm_assign_atom_types.o qm_assign_atom_types.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm_link_atoms.o qm_link_atoms.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_print_charges.o qm2_print_charges.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_print_bondorders.o qm2_print_bondorders.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_broyden.o qm2_dftb_broyden.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_dispersion_egr.o qm2_dftb_dispersion_egr.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_dispersion_params.o qm2_dftb_dispersion_params.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_dispersionread.o qm2_dftb_dispersionread.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_energy.o qm2_dftb_energy.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_ewevge.o qm2_dftb_ewevge.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_externalshift.o qm2_dftb_externalshift.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_fermi.o qm2_dftb_fermi.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_get_qm_forces.o qm2_dftb_get_qm_forces.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_gamma.o qm2_dftb_gamma.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_gammamat.o qm2_dftb_gammamat.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_get_qmmm_forces.o qm2_dftb_get_qmmm_forces.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_gettab.o qm2_dftb_gettab.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_load_params.o qm2_dftb_load_params.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_mulliken.o qm2_dftb_mulliken.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_repulsiv.o qm2_dftb_repulsiv.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_self.o qm2_dftb_self.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_shift.o qm2_dftb_shift.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_skpar.o qm2_dftb_skpar.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_slkode.o qm2_dftb_slkode.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_slktrafo.o qm2_dftb_slktrafo.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_read_cm3.o qm2_dftb_read_cm3.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_cm3.o qm2_dftb_cm3.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_gb.o qm2_dftb_gb.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_dftb_3rd_order.o qm2_dftb_3rd_order.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_h1elec_d.o qm2_h1elec_d.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O3 -mtune=native -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_repp_d.o qm2_repp_d.F90 gfortran -Wall -Wno-unused-function -DBINTRAJ -DEMIL -c -O0 -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o qm2_print_energy.o qm2_print_energy.F90 cd ../lapack; make install make[3]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/lapack' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/lapack' cd ../blas; make install make[3]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/blas' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/blas' cd ../arpack && make install make[3]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/arpack' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/arpack' cd ../lib; make sys.a make[3]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/lib' gfortran -DBINTRAJ -DEMIL -c -O0 -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o sys.o sys.F /usr/bin/clang -c -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN -o wallclock.o wallclock.c gfortran -DBINTRAJ -DEMIL -c -ffree-form -O0 -fPIC -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o veclib.o veclib.F90 ar rv sys.a sys.o wallclock.o veclib.o ar: creating sys.a a - sys.o a - wallclock.o a - veclib.o ranlib sys.a make[3]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/lib' gfortran -DBINTRAJ -DEMIL -fPIC -ffree-form -I/home/redantlabs/projects/amber16/include -I/home/redantlabs/projects/amber16/include -o sqm file_io_dat.o constants.o findmask.o sqm.SQM.o xmin.o xminC.o amopen.o mexit.o assert.o timer_dummy.o nmlsrc.o qm_print_info.SQM.o qm2_energy.SQM.o qm2_read_nm_and_alloc.SQM.o qm2_scf.SQM.o qm2_dftb_scf.SQM.o qm2_allocate_e_repul.o qm2_calc_charges.o qm2_calc_dipole.o qm2_calc_rij_and_eqns.o qm2_dihed.o qm2_fock.o qm2_get_qm_forces.o qm2_get_qmmm_forces.o qm2_h1elec.o qm2_hcore_qmqm.o qm2_hcore_qmmm.o qm2_identify_peptide_links.o qm2_load_params_and_allocate.o qm2_repp.o qm2_rotate_qmqm.o qm2_core_core_repulsion.o qm2_core_core_repulsion_dxyz.o qm2_iterator_mod.o qm2_diagonalizer_module.o qm2_setup_orb_exp.o qm2_smallest_number.o qm2_fock_predict.o qm_gb.o qm_zero_charges.o qm_assign_atom_types.o qm_link_atoms.o qm2_print_charges.o qmmm_qmtheorymodule.o qm2_print_bondorders.o qm2_pm6_hof_module.o qm2_params_module.o qm2_dftb_module.o qm2_dftb_broyden.o qm2_dftb_dispersion_egr.o qm2_dftb_dispersion_params.o qm2_dftb_dispersionread.o qm2_dftb_energy.o qm2_dftb_ewevge.o qm2_dftb_externalshift.o qm2_dftb_fermi.o qm2_dftb_get_qm_forces.o qm2_dftb_gamma.o qm2_dftb_gammamat.o qm2_dftb_get_qmmm_forces.o qm2_dftb_gettab.o qm2_dftb_load_params.o qm2_dftb_mulliken.o qm2_dftb_repulsiv.o qm2_dftb_self.o qm2_dftb_shift.o qm2_dftb_skpar.o qm2_dftb_slkode.o qm2_dftb_slktrafo.o qm2_dftb_read_cm3.o qm2_dftb_cm3.o qm2_dftb_gb.o qm2_dftb_3rd_order.o qmmm_module.o qmmm_nml_module.o qmmm_struct_module.o qmmm_vsolv_module.o qm2_parameters.o dh_correction_module.o utilitiesModule.o elementOrbitalIndex.o parameterReader.o slater_overlap.o qm2_h1elec_d.o rotation.o qm2_repp_d.o opnq_Edisp.o opnq_Erep.o opnq_Evdw.o opnq.o opnq_SwitchMod.o qm2_fock_d.o MNDOChargeSeparation.o qm2_print_energy.o \ -L/home/redantlabs/projects/amber16/lib -larpack -llapack -lblas -lxblas-amb ../lib/sys.a mv sqm /home/redantlabs/projects/amber16/bin mv: replace ‘/home/redantlabs/projects/amber16/bin/sqm’, overriding mode 0755 (rwxr-xr-x)? y make[2]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/sqm' (cd reduce && make install ) make[2]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/reduce' installing ./toolclasses... make[3]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/reduce/toolclasses' /usr/bin/clang++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c UseCount.cpp -o UseCount.o /usr/bin/clang++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c Point3d.cpp -o Point3d.o /usr/bin/clang++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c Stringclass.cpp -o Stringclass.o /usr/bin/clang++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c Hash.cpp -o Hash.o /usr/bin/clang++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c utility.cpp -o utility.o /usr/bin/clang++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c column_sprintf.cpp -o column_sprintf.o /usr/bin/clang++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c column_sscanf.cpp -o column_sscanf.o /usr/bin/clang++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c DisjointSets.cpp -o DisjointSets.o Loading libtoolclasses.a ... ar: `u' modifier ignored since `D' is the default (see `U') done make[3]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/reduce/toolclasses' installing ./libpdb... make[3]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/reduce/libpdb' /usr/bin/clang++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_read.cpp -o pdb_read.o /usr/bin/clang++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_sprntf.cpp -o pdb_sprntf.o /usr/bin/clang++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_sscanf.cpp -o pdb_sscanf.o /usr/bin/clang++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_chars.cpp -o pdb_chars.o /usr/bin/clang++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_type.cpp -o pdb_type.o In file included from pdb_type.cpp:29: /usr/bin/../lib/gcc/x86_64-redhat-linux/5.3.1/../../../../include/c++/5.3.1/cstring:100:3: error: conflicting types for 'memchr' memchr(void* __s, int __c, size_t __n) ^ /usr/include/string.h:92:14: note: previous declaration is here extern void *memchr (const void *__s, int __c, size_t __n) ^ In file included from pdb_type.cpp:29: /usr/bin/../lib/gcc/x86_64-redhat-linux/5.3.1/../../../../include/c++/5.3.1/cstring:104:3: error: conflicting types for 'strchr' strchr(char* __s, int __n) ^ /usr/include/string.h:231:14: note: previous declaration is here extern char *strchr (const char *__s, int __c) ^ In file included from pdb_type.cpp:29: /usr/bin/../lib/gcc/x86_64-redhat-linux/5.3.1/../../../../include/c++/5.3.1/cstring:108:3: error: conflicting types for 'strpbrk' strpbrk(char* __s1, const char* __s2) ^ /usr/include/string.h:310:14: note: previous declaration is here extern char *strpbrk (const char *__s, const char *__accept) ^ In file included from pdb_type.cpp:29: /usr/bin/../lib/gcc/x86_64-redhat-linux/5.3.1/../../../../include/c++/5.3.1/cstring:112:3: error: conflicting types for 'strrchr' strrchr(char* __s, int __n) ^ /usr/include/string.h:258:14: note: previous declaration is here extern char *strrchr (const char *__s, int __c) ^ In file included from pdb_type.cpp:29: /usr/bin/../lib/gcc/x86_64-redhat-linux/5.3.1/../../../../include/c++/5.3.1/cstring:116:3: error: conflicting types for 'strstr' strstr(char* __s1, const char* __s2) ^ /usr/include/string.h:337:14: note: previous declaration is here extern char *strstr (const char *__haystack, const char *__needle) ^ 5 errors generated. Makefile:8: recipe for target 'pdb_type.o' failed make[3]: *** [pdb_type.o] Error 1 make[3]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/reduce/libpdb' installing ./reduce_src... make[3]: Entering directory '/home/redantlabs/projects/amber16/AmberTools/src/reduce/reduce_src' /usr/bin/clang++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/redantlabs/projects/amber16/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o GraphToHoldScores.o GraphToHoldScores.cpp /usr/bin/clang++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/redantlabs/projects/amber16/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o reduce.o reduce.cpp /usr/bin/clang++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/redantlabs/projects/amber16/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o CTab.o CTab.cpp /usr/bin/clang++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/redantlabs/projects/amber16/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o ElementInfo.o ElementInfo.cpp /usr/bin/clang++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/redantlabs/projects/amber16/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o StdResH.o StdResH.cpp /usr/bin/clang++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/redantlabs/projects/amber16/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o ResBlk.o ResBlk.cpp /usr/bin/clang++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/redantlabs/projects/amber16/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o AtomConn.o AtomConn.cpp /usr/bin/clang++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/redantlabs/projects/amber16/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o AtomPositions.o AtomPositions.cpp /usr/bin/clang++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/redantlabs/projects/amber16/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o DotSph.o DotSph.cpp /usr/bin/clang++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/redantlabs/projects/amber16/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o Mover.o Mover.cpp /usr/bin/clang++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/redantlabs/projects/amber16/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o RotMethyl.o RotMethyl.cpp /usr/bin/clang++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/redantlabs/projects/amber16/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o RotAromMethyl.o RotAromMethyl.cpp /usr/bin/clang++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/redantlabs/projects/amber16/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o RotDonor.o RotDonor.cpp /usr/bin/clang++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/redantlabs/projects/amber16/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o FlipMemo.o FlipMemo.cpp /usr/bin/clang++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/redantlabs/projects/amber16/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o CliqueList.o CliqueList.cpp /usr/bin/clang++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/redantlabs/projects/amber16/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o AtomDescr.o AtomDescr.cpp /usr/bin/clang++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/redantlabs/projects/amber16/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o PDBrec.o PDBrec.cpp /usr/bin/clang++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/redantlabs/projects/amber16/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o MoveableNode.o MoveableNode.cpp /usr/bin/clang -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/redantlabs/projects/amber16/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -c -o hybrid_36_c.o hybrid_36_c.c /usr/bin/clang++ -o reduce GraphToHoldScores.o reduce.o CTab.o ElementInfo.o StdResH.o ResBlk.o AtomConn.o AtomPositions.o DotSph.o Mover.o RotMethyl.o RotAromMethyl.o RotDonor.o FlipMemo.o CliqueList.o AtomDescr.o PDBrec.o MoveableNode.o hybrid_36_c.o -L../libpdb -lpdb++ -L../toolclasses -ltoolclasses -lm /usr/bin/ld: cannot find -lpdb++ clang: error: linker command failed with exit code 1 (use -v to see invocation) Makefile:41: recipe for target 'reduce' failed make[3]: *** [reduce] Error 1 make[3]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/reduce/reduce_src' Makefile:19: recipe for target 'install' failed make[2]: *** [install] Error 2 make[2]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src/reduce' Makefile:17: recipe for target 'serial' failed make[1]: *** [serial] Error 2 make[1]: Leaving directory '/home/redantlabs/projects/amber16/AmberTools/src' Makefile:7: recipe for target 'install' failed make: *** [install] Error 2