Hi Amber users,
I am simulating a lipid-peptide system. To keep my peptide from interacting
with lipids in the periodic image, I want to apply a restraint on the
distance between a protein atom and a lipid atom. From what I understand,
the only way to apply such restraint is to use "NMR restraints".
Is there a way to apply the restraint only on the z-projection of the
distance? In principle, I am not concerned with the actual distance between
lipid and peptide, as long as the z-projection of the distance is below a
certain upper-bound.
Thanks in advance,
Chitrak.
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Received on Fri Mar 24 2017 - 12:00:02 PDT
