Hello,
Can someone help me to solve this residual decomposition problem... I have
posted few days back and waiting for help. I am attaching my earlier
message here.
Thanks in advance.
Regards,
Kumar
-------------------------
Hello,
I am working on a system (around 240 residues) in which ligand covalently
bound to a cysteine residue. This cysteine residue is in middle of the
protein structure (residue 208). I have created new residue (Cys + covalent
ligand) using xleap and i completed the simulation successfully.
Everything looks normal for visual and initial analyses.
Now i am trying to do residual decomposition for this simulation where i
am facing some issues.
Can someone help me to generate "extract-coord.in" and "reswise.in" files
for this case?
I am wondering how to declare "COMREC", "COMLIG", "RECRES",
"{COM,REC,LIG}PRI" and "{REC,LIG}MAP"
Please help me this regard and let me know if you need any further
information to solve this puzzle.
Regards,
Kumar
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Mar 24 2017 - 07:00:04 PDT
