Re: [AMBER] converting trajectory file from NAMD to AMBER

From: Daniel Roe <daniel.r.roe.gmail.com>
Date: Thu, 16 Mar 2017 11:05:45 -0400

You can use cpptraj:

cpptraj -p <topology> -y <input dcd> -x output.mdcrd

Alternatively use the input:

parm <topology>
trajin <input dcd>
trajout output.mdcrd

Hope this helps,

-Dan

On Thu, Mar 16, 2017 at 10:43 AM, Oleksii Zdorevskyi
<zdorevskyi.bitp.kiev.ua> wrote:
> Dear AMBER users community,
>
> Could you tell me please how can I convert a .dcd trajectory produced by
> NAMD to AMBER .trj format? Thank you in advance.
>
> Best regards,
> Oleksii
>
>
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber 



-- 
-------------------------
Daniel R. Roe
Laboratory of Computational Biology
National Institutes of Health, NHLBI
5635 Fishers Ln, Rm T900
Rockville MD, 20852
https://www.lobos.nih.gov/lcb
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Received on Thu Mar 16 2017 - 08:30:02 PDT
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