hi,
1. Did you make a fresh (no previous compiled files) install?
2. What's your CC CXX env?
3. Output of "./configure -macAccelerate clang"
Hai
On Mon, Mar 13, 2017 at 4:32 PM, Giannis Gl <igaldadas.gmail.com> wrote:
> Hello!
>
> The exact sequence of commands that I used is:
>
>
> ./configure -macAccelerate clang
>
> make install
>
>
> And the last lines before the error appears are the followings:
>
>
>
> mv new2oldparm /Users/yiannisgaldadas/Programs/AmberTools16/amber16/bin
>
> override rwxr-xr-x root/staff for
> /Users/yiannisgaldadas/Programs/AmberTools16/amber16/bin/new2oldparm? (y/n
> [n]) y
>
> /bin/rm -f
>
> (cd addles && /Applications/Xcode.app/Contents/Developer/usr/bin/make
> install)
>
> cd ../lib && /Applications/Xcode.app/Contents/Developer/usr/bin/make
> mexit.o nxtsec.o
>
> make[3]: `mexit.o' is up to date.
>
> make[3]: `nxtsec.o' is up to date.
>
> gfortran -DBINTRAJ -DEMIL -fPIC
> -I/Users/yiannisgaldadas/Programs/AmberTools16/amber16/include
> -I/Users/yiannisgaldadas/Programs/AmberTools16/amber16/include \
>
> -o /Users/yiannisgaldadas/Programs/AmberTools16/amber16/bin/addles
> lesmain.o addspace.o readprm.o writprm.o readcrd.o writcrd.o pick.o
> rline.o
> nxt.o intgr.o find.o of.o geti.o unit.o getc.o alert.o
> echo.o get4c.o getd.o wlesprm.o lesprm.o random.o les2prm.o checksz.o
> addspace_atm1st.o \
>
> ../lib/mexit.o ../lib/nxtsec.o
>
> ld: can't write output file:
> /Users/yiannisgaldadas/Programs/AmberTools16/amber16/bin/addles for
> architecture x86_64
>
> collect2: error: ld returned 1 exit status
>
> make[2]: ***
> [/Users/yiannisgaldadas/Programs/AmberTools16/amber16/bin/addles] Error 1
>
> make[1]: *** [serial] Error 2
>
> make: *** [install] Error 2
>
>
>
>
>
> On 13 March 2017 at 20:27, Hai Nguyen <nhai.qn.gmail.com> wrote:
>
> > Did you use clang + gfortran?
> >
> > Hai
> >
> > On Mon, Mar 13, 2017 at 4:27 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> >
> > > hi,
> > >
> > > can you post exact command and output? thanks.
> > >
> > > Hai
> > >
> > >
> > > On Mon, Mar 13, 2017 at 3:10 PM, Giannis Gl <igaldadas.gmail.com>
> wrote:
> > >
> > >> Dear Amber users,
> > >>
> > >> I try to install AmberTools16 on my MacBood (macOS Sierra, 10.12.3),
> > >> but the make install command terminates with the following error:
> > >>
> > >>
> > >> ld: can't write output file: /Users/yiannisgaldadas/
> > >> Programs/AmberTools16/amber16/bin/addles for architecture x86_64
> > >>
> > >> collect2: error: ld returned 1 exit status
> > >>
> > >> make[2]: *** [/Users/yiannisgaldadas/Programs/AmberTools16/amber16/
> bin/
> > >> addles]
> > >> Error 1
> > >>
> > >> make[1]: *** [serial] Error 2
> > >>
> > >> make: *** [install] Error 2
> > >>
> > >>
> > >> I have already installed gfortrant compiler and patched the file that
> is
> > >> recommended in the following archive to solve another error that
> > >>
> > >> occurred
> > >>
> > >>
> > >> http://archive.ambermd.org/201702/0042.html
> > >>
> > >>
> > >> but I can not find any solution to the error that I get now.
> > >>
> > >> Any idea what might cause this error?
> > >>
> > >>
> > >> Thanks,
> > >>
> > >> Yiannis
> > >> _______________________________________________
> > >> AMBER mailing list
> > >> AMBER.ambermd.org
> > >> http://lists.ambermd.org/mailman/listinfo/amber
> > >>
> > >
> > >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
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Received on Mon Mar 13 2017 - 14:00:03 PDT
