[AMBER] Generate psf file for chamber

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From: Shanghaitech University WuMeng <wumeng.shanghaitech.edu.cn>
Date: Thu, 9 Mar 2017 18:56:23 +0800

Hi All,

  I am running a membrane protein MD simulation with Amber16. I want to use the chamber tools in parmed to set CHARMM36 parameters for my system, but I am trapped with a problem:
  Is there a way to generate psf file from pdb file which is actually a protein ligand complex and lipids in water box and if it is so, then how? Maybe I can use Charmm-gui more directly, but the protein is not mine...

  Any suggestions would be greatly appreciated. Thank you in advance!

All the best,
Wu Meng
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Received on Thu Mar 09 2017 - 03:00:03 PST