Run semi-empirical minimization
 &qmmm
    qm_theory='AM1', grms_tol=0.0005,
  scfconv=1.d-10,   qmcharge=0,
 /
   6    CA        5.8790       -2.8150       -3.9420 
   6     C        7.1110       -1.8710       -3.9890 
   8     O        7.7100       -1.8030       -5.2470 
   6    CB        5.2060       -2.8250       -2.5810 
   8    OG        4.7380       -1.5300       -2.3710 
   1     H        5.8210       -4.6280       -5.0640 
   1    HA        5.1550       -2.4710       -4.6800 
   1   HB3        5.9410       -3.0730       -1.8150 
   1   HB2        4.3630       -3.5160       -2.5990 
   6   C12        4.1510        0.5740       -1.3670 
   6   C13        5.0640        1.3310       -2.3510 
   6   C14        5.8970        2.2800       -1.5030 
   6   C21        4.7900       -0.8240       -1.2310 
   7   N22        5.3260       -1.2730       -0.0790 
   1   H12        3.1770        0.4520       -1.8400 
   1  H131        4.4510        1.9080       -3.0430 
   1  H132        5.7220        0.6220       -2.8530 
   1  H141        6.1320        3.1680       -2.0900 
   1  H142        6.7080        1.7210       -1.0360 
   1  HN22        5.3290       -0.6830        0.7400 
   6    C1        3.7970        3.4800       -1.0910 
   6    C2        4.9170        2.6290       -0.4880 
   7    N1        4.0370        1.5970       -0.3900 
   6    C3        2.9240        1.9120        0.2990 
   8    O1        2.3420        1.2580        1.1320 
   7    N2        2.7030        3.1230       -0.2110 
   1    H1        4.0590        4.5640       -1.1460 
   1    H2        3.5800        3.1230       -2.1280 
   1    H3        5.3100        3.1180        0.4360 
   1    H4        1.8980        3.7010       -0.0150 
   8   O31        7.6200       -1.1470       -2.9510 
   1    HN        7.2550       -4.1880       -4.5160 
   7   N33        6.3660       -3.9910       -4.5610 
   1   H34        8.3830       -0.6480       -3.2520 

