Not sure what the SQM error is, but looking at the pdb's, I notice the
2nd has explicit '+'s in it, which might confuse some programs.
Bill
On 2/21/17 10:53 PM, Mitul Srivastava wrote:
> ---------- Forwarded message ----------
> From: <amber-owner.ambermd.org>
> Date: Wed, Feb 22, 2017 at 12:03 PM
> Subject: SQM Error
> To: mitul.thsti.res.in
>
>
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> ---------- Forwarded message ----------
> From: Mitul Srivastava <mitul.thsti.res.in>
> To: amber.ambermd.org
> Cc:
> Date: Wed, 22 Feb 2017 12:03:04 +0530
> Subject: SQM Error
> Hello Amber Users,
> i am doing protein-ligand complex study and I
> am facing a very unique error where the error is showing while running
> ANTECHAMBER on Amber16. The error is -- I have used two proteins with same
> ligand. In attached file "lig.pdb" of one complex is running fine while
> "lig_new.pdb" is not running and is showing the sqm error. though both the
> ligands are same and I am surprised why this error is coming.
>
> please help me as I am not able to troubleshoot.
>
> thank you
>
>
>
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Received on Tue Feb 21 2017 - 23:30:03 PST
