[AMBER] Segmentation fault when starting parmchk2 for a modified aminoacid residue

From: Nikolay N. Kuzmich <nnkuzmich.gmail.com>
Date: Tue, 21 Feb 2017 17:03:32 +0300

Dear Amber users,

preparing necessary files for simulation of a protein with modified serine
I was checking the presense of parameters via parmchk2 application just as
it is
described in the "Simulating the Green Fluorescent Protein" tutorial.

parmchk2 -i Ser630_bound.prepin -f prepi -o frcmod.adf -a Y -p \

The own generated prepin file was employed.
And then I got message "Segmentation fault".
I have found the similar report about this error in the archive via google
but still hardly know what to do.
Is it a problem with my prepin file?

What should I pay attention to in it?
And what can be wrong there?

Thank you in advance,
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Received on Tue Feb 21 2017 - 06:30:02 PST
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