[AMBER] Distance between of each residues of two chains within trajectory

From: Jesmita Dhar <dhar.beauty.gmail.com>
Date: Mon, 20 Feb 2017 14:52:33 +0530

I have simulated two 6 residues long peptides,separated by 2 nm. Now I want
to study if there is any possibilibity of fibrillation over time. For this,
I want to find out the closest residues for each of the residues present in
peptide during the simulation. Is it possible in AMBER or in VMD. Please
help me..
-Jesmita Dhar
Senior Research Fellow
Bose Institute
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Received on Mon Feb 20 2017 - 01:30:02 PST
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