[AMBER] density and concentration of 8Mureabox

From: Jorge Iulek <jiulek.gmail.com>
Date: Thu, 16 Feb 2017 14:44:18 -0200

   Dear all,

   "8Mureabox.off" file contains 330 urea molecules and 1464 water molecules,
   in a box with dimensions 46.256200 x 43.053000 x 49.134200 A³ , right?
       That is { [(330 x 60 ) + (1464 x 18 )] * 1.6605e-24 } g in a volume of
   (46.256200 x 43.053000 x 49.134200 x 1e-24) cm^3, right? That gives me a
   density of 0.7832 g / cm^3
       Also, I have an amount concentration of [( 330 / 6.022e23 ) mol ] /
   [(46.256200 x 43.053000 x 49.134200 x 1e-27) L ], that results in 5.600 mol
   / L

   "8Murea.readme" file states "Box of 8M urea in water. Pre-equilibrated at
   300K and 1 atm (NPT) for 0.5 ns. Final density 1.12". As far as I
   understand, the box dimensions already imply equilibrium at 1 bar (right?).
   What do I miss here?

   Thank you,
   Prof. Jorge Iulek
   Department of Chemistry
   State University of Ponta Grossa
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Received on Thu Feb 16 2017 - 09:00:03 PST
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