[AMBER] how to solve syntax error issue

From: Ayesha Kanwal <ayesha_comsian.hotmail.com>
Date: Tue, 7 Feb 2017 10:09:57 +0000

Hi all,

I have amber14 on my system and using antechamber to prepare ligand prmtop & inpcrd file. i have set the following path:

export AMBERHOME=/home/xxx/Desktop/amber14

i am using protein pdb sample given on antechamber website and following same command as an example

i have pasted sustiva.pdb file in amber14 folder.

but when i have used command

reduce sustiva.pdb > sustiva_h.pdb

every time it is generated syntax error

even i have also checked this command after pasting sustiva.pdb file in bin folder where tleap has already exist.

I don't know what is the reason behind it.

any suggestions?



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Received on Tue Feb 07 2017 - 02:30:03 PST
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