[AMBER] changing water molecules in water box

From: Lara rajam <lara.4884.gmail.com>
Date: Thu, 2 Feb 2017 10:24:08 -0500

Dear Amber !
I am trying to do an explicit water based simulation of a DNA 10 basepair.
When I put a water box of size and type solvateoct 8 it has more number of
water molecules for eg. 35000. Is it possible for me to add approximately
10000 water molecules inside the box using leap to reduce the computational
cost and will it affect the dynamics of the system anyway by doing it so .
Since the density will be maintained the same in MD, any comments will be
useful for better understanding

Thank you !
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Received on Thu Feb 02 2017 - 07:30:02 PST
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