I can't do that. It said "* bash: log.make_install: Permission denied*".
even if I use *sudo*, I still can't do that.
I don't know what happen. so, what should I do next?
On Wed, Feb 1, 2017 at 11:12 AM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> 1.1 what's the output of
>
> ./configure gnu
>
> 1.2 What's full output of
>
> make install
>
> 2. What's exact message of the permission denied you got?
>
> 3. What are outputs for below?
>
> gfortran --version
>
> gcc --version
>
> PS: to get the output, you can try something like
>
> make install >& log.make_install
>
> Hai
>
> On Tue, Jan 31, 2017 at 10:28 PM, Danu Fajar <dfr879.gmail.com> wrote:
>
> > 1. First, extract the files:
> >
> > *cd /home/danu/amber/amber16*
> >
> > *tar -xvf AmberTools16.tar.bz2*
> >
> >
> > 2. Next, set AMBERHOME environment variable:
> >
> > *export AMBERHOME=/home/myname/amber16 (*I did this in
> >
> > * sudo –H gedit /etc/environtment) *3. Next, install some compilers and
> > other libraries.
> > *sudo apt-get install csh flex gfortran g++ xorg-dev \*
> >
> > *zlib1g-dev libbz2-dev patch python-tk python-matplotlib*
> >
> > 4. Now, in the AMBERHOME directory, I run the configure script:
> >
> > *cd $AMBERHOME*
> >
> > *./configure gnu*
> >
> > It created two resource files in the AMBERHOME directory: amber.sh and
> > amber.csh.
> >
> > 5. set up shell environment for Amber:
> >
> >
> >
> > *source /home/danu/amber/amber16/amber.sh *
> >
> > 6. Then,
> >
> > *make install *(but if I didn’t use *sudo*, the permission is always
> > denied, so I use *sudo make install)*
> >
> > that was the last steps before the error happen
> > the error is show in the attachment
> >
> > I'm sorry if I didn't give every information you need to help me, just
> like
> > I said before, I'm a newbie in linux machine, so please be patient
> helping
> > me. Just tell me if I didn't give the correct information you need to
> help
> > me.
> >
> > On Wed, Feb 1, 2017 at 12:58 AM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> >
> > > Please attach the output of everything you did in this email.
> > >
> > > (including running ./configure, make install ,...)
> > >
> > > Also include output of the permission denied.
> > >
> > > Hai
> > >
> > > On Tue, Jan 31, 2017 at 12:37 PM, Danu Fajar <dfr879.gmail.com> wrote:
> > >
> > > > hello HAI, I don't know, I just followed the manual from the begining
> > > since
> > > > I'm a newbie.
> > > > if I didn't use sudo, the permission is always denied.
> > > > can u give me some helpful suggestion or tell me the way you did for
> > your
> > > > installation please.
> > > >
> > > > On Tue, Jan 31, 2017 at 9:29 PM, Hai Nguyen <nhai.qn.gmail.com>
> wrote:
> > > >
> > > > > hi
> > > > >
> > > > > which compiler you are using?
> > > > >
> > > > > lease do NOT use sudo.
> > > > >
> > > > > Hai
> > > > >
> > > > > On Tue, Jan 31, 2017 at 9:25 AM, Danu Fajar <dfr879.gmail.com>
> > wrote:
> > > > >
> > > > > > Dear AMBER expert,
> > > > > >
> > > > > > I've followed the instruction in http://ambermd.org/doc12/Amber
> > > 16.pdf
> > > > > > but in the installation process (page 25 point 5 or page 26 point
> > 6),
> > > > > > there's an error when "make install" (attachment number 2) and
> > also I
> > > > > can't
> > > > > > identify the problem event I've follow point 7.it also has an
> > error
> > > > > > (attachment number 3) and it says I haven't set the source. In
> > Fact,
> > > > I've
> > > > > > done that first (attachment number1) before "make install". How
> > can I
> > > > fix
> > > > > > it?
> > > > > >
> > > > > > Sincerely,
> > > > > > Danu Fajar
> > > > > >
> > > > > > _______________________________________________
> > > > > > AMBER mailing list
> > > > > > AMBER.ambermd.org
> > > > > > http://lists.ambermd.org/mailman/listinfo/amber
> > > > > >
> > > > > >
> > > > > _______________________________________________
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> > > > http://lists.ambermd.org/mailman/listinfo/amber
> > > >
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> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> >
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> >
> >
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Received on Wed Feb 01 2017 - 18:30:02 PST
