1.1 what's the output of
./configure gnu
1.2 What's full output of
make install
2. What's exact message of the permission denied you got?
3. What are outputs for below?
gfortran --version
gcc --version
PS: to get the output, you can try something like
make install >& log.make_install
Hai
On Tue, Jan 31, 2017 at 10:28 PM, Danu Fajar <dfr879.gmail.com> wrote:
> 1. First, extract the files:
>
> *cd /home/danu/amber/amber16*
>
> *tar -xvf AmberTools16.tar.bz2*
>
>
> 2. Next, set AMBERHOME environment variable:
>
> *export AMBERHOME=/home/myname/amber16 (*I did this in
>
> * sudo –H gedit /etc/environtment) *3. Next, install some compilers and
> other libraries.
> *sudo apt-get install csh flex gfortran g++ xorg-dev \*
>
> *zlib1g-dev libbz2-dev patch python-tk python-matplotlib*
>
> 4. Now, in the AMBERHOME directory, I run the configure script:
>
> *cd $AMBERHOME*
>
> *./configure gnu*
>
> It created two resource files in the AMBERHOME directory: amber.sh and
> amber.csh.
>
> 5. set up shell environment for Amber:
>
>
>
> *source /home/danu/amber/amber16/amber.sh *
>
> 6. Then,
>
> *make install *(but if I didn’t use *sudo*, the permission is always
> denied, so I use *sudo make install)*
>
> that was the last steps before the error happen
> the error is show in the attachment
>
> I'm sorry if I didn't give every information you need to help me, just like
> I said before, I'm a newbie in linux machine, so please be patient helping
> me. Just tell me if I didn't give the correct information you need to help
> me.
>
> On Wed, Feb 1, 2017 at 12:58 AM, Hai Nguyen <nhai.qn.gmail.com> wrote:
>
> > Please attach the output of everything you did in this email.
> >
> > (including running ./configure, make install ,...)
> >
> > Also include output of the permission denied.
> >
> > Hai
> >
> > On Tue, Jan 31, 2017 at 12:37 PM, Danu Fajar <dfr879.gmail.com> wrote:
> >
> > > hello HAI, I don't know, I just followed the manual from the begining
> > since
> > > I'm a newbie.
> > > if I didn't use sudo, the permission is always denied.
> > > can u give me some helpful suggestion or tell me the way you did for
> your
> > > installation please.
> > >
> > > On Tue, Jan 31, 2017 at 9:29 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> > >
> > > > hi
> > > >
> > > > which compiler you are using?
> > > >
> > > > lease do NOT use sudo.
> > > >
> > > > Hai
> > > >
> > > > On Tue, Jan 31, 2017 at 9:25 AM, Danu Fajar <dfr879.gmail.com>
> wrote:
> > > >
> > > > > Dear AMBER expert,
> > > > >
> > > > > I've followed the instruction in http://ambermd.org/doc12/Amber
> > 16.pdf
> > > > > but in the installation process (page 25 point 5 or page 26 point
> 6),
> > > > > there's an error when "make install" (attachment number 2) and
> also I
> > > > can't
> > > > > identify the problem event I've follow point 7.it also has an
> error
> > > > > (attachment number 3) and it says I haven't set the source. In
> Fact,
> > > I've
> > > > > done that first (attachment number1) before "make install". How
> can I
> > > fix
> > > > > it?
> > > > >
> > > > > Sincerely,
> > > > > Danu Fajar
> > > > >
> > > > > _______________________________________________
> > > > > AMBER mailing list
> > > > > AMBER.ambermd.org
> > > > > http://lists.ambermd.org/mailman/listinfo/amber
> > > > >
> > > > >
> > > > _______________________________________________
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> > > > http://lists.ambermd.org/mailman/listinfo/amber
> > > >
> > > _______________________________________________
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> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
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>
>
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Received on Tue Jan 31 2017 - 20:30:03 PST
