Re: [AMBER] TI simulations blowing up with clambda = 1 with pmemd

From: David Case <>
Date: Fri, 27 Jan 2017 15:42:19 -0500

On Fri, Jan 27, 2017, Stefan Ivanov wrote:

> I can't install anything on the cluster, though. That's up to the sys
> admin to decide.

Not trying to get in between you and the sys-admin, but most users just
install Amber and AmberTools in their home directories. Nothing is
written outside the ~/amber16 directory, and no super-user privileges are

Of course, there may be other restrictions on what programs you are allowed to
run, but these must be based on local policies, not on permissions. If you
can create files in your home directory, you can install Amber.


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Received on Fri Jan 27 2017 - 13:00:02 PST
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