[AMBER] 5' Terminal Phosphate Parameters

From: Paul Meister <meisterp.uwindsor.ca>
Date: Thu, 26 Jan 2017 09:54:30 -0500

Hello AMBER users,

I am trying to run some MDs on a enzyme with a bound tRNA. I have tried to
get parameters for the 5' terminal base with a phosphate using prepgen and
the RED server, however there is always one atom that is not recognized,
O5', the oxygen linking phosphate to the ribose. Does anyone know how to
solve this problem or are there parameters for a terminal guanosine

Thank you all,

AMBER mailing list
Received on Thu Jan 26 2017 - 07:00:03 PST
Custom Search