Hi everyone,
Thank you for your previous response on installing AmberTools. I have
followed the download on web link you mentioned below.
http://ambermd.org/AmberTools16-get.html
Then, I began to follow instructions on installment on pg.23 of Amber 2016
Reference manual under Sect. 2 Installation.
I have executed the command (4):
> ./configure --help
> ./configure gnu
And it looks like everything works well up to lgfortran. I am copying
below the error listed. Would you have recommendations as to what to do
next? - do you have a recommendation as to where to download lgfortran
libraries for Mac OS? - Thank You!
Testing the g++ compiler:
g++ -fPIC -o testp testp.cpp
OK
Testing the gfortran compiler:
gfortran -fPIC -O0 -o testp testp.f
OK
Testing mixed C/Fortran compilation:
gcc -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o testp.c.o
testp.c
gfortran -fPIC -O0 -c -o testp.f.o testp.f
gcc -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp
testp.c.o testp.f.o -lgfortran -w
ld: library not found for -lgfortran
clang: error: linker command failed with exit code 1 (use -v to see
invocation)
./configure2: line 2348: ./testp: No such file or directory
Error: Unable to compile mixed C/Fortran code.
Please check your compiler settings and configure flags.
Configure failed due to the errors above!
On Tue, Jan 17, 2017 at 10:47 PM, Nhai <nhai.qn.gmail.com> wrote:
> Ah good point
>
> That link is meant to install required software to prepare for installing
> amber.
>
> You still need to download anbertools
>
> http://ambermd.org/AmberTools16-get.html
>
> Hai Nguyen
>
> > On Jan 18, 2017, at 1:24 AM, Karla Galdamez <kgalda.berkeley.edu> wrote:
> >
> > Hi,
> >
> > Thank you very much in advance for your help. I am trying to download
> > Amber on Mac OS from the link below.
> > http://ambermd.org/amber_install.html
> >
> > I have followed the instructions including XCode, and typing the
> suggested
> > commands on the terminal line following instructions as suggested.
> >
> >
> > Subsequently, I installed XQuartz, and gfortran. However, when I write
> > down the last command to install Amber: ./configure -macAccelerate clang,
> > I obtain the response of : ' No such file or directory.
> > I have included the command lines below.
> >
> > Thank you once more for your help!
> > With kind regards,
> > Karla
> >
> >
> >> karlas-MacBook-Pro:~ karlagaldamez$ sudo xcodebuild -license
> > Password:
> > Apple Inc.
> >
> > Xcode and Apple SDKs Agreement
> >
> >
> >> karlas-MacBook-Pro:~ karlagaldamez$ xcode-select --install
> > xcode-select: error: command line tools are already installed, use
> > "Software Update" to install updates
> >> karlas-MacBook-Pro:~ karlagaldamez$ ./configure -macAccelerate clang
> > -bash: ./configure: No such file or directory
> >
> >
> >
> > --
> > Karla M. Galdamez, Ph.D
> > Affiliate Researcher
> > Physics Department
> > University of California at Berkeley
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Karla M. Galdamez, Ph.D
Affiliate Researcher
Physics Department
University of California at Berkeley
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Received on Fri Jan 20 2017 - 22:00:02 PST
