Re: [AMBER] Continue running an incomplete MD with NMR restraints

From: Bill Ross <ross.cgl.ucsf.edu>
Date: Sat, 14 Jan 2017 23:18:54 -0800

If you know what the value was when the run ended, it should be simple
to set value1 equal to that and the steps accordingly for your next run.

Bill


On 1/14/17 10:43 PM, Kat G wrote:
> Hi all,
>
> I am running md in sander with nmr restraints (bond, angle, torsion and
> rdc). The force constant is set up to increase over time like &wt
> TYPE='REST', istep1=0, istep2=10000000, value1=0.3, value2=1.0, /
>
> Due to the expired runtime limit, the simulation stopped in the middle. I
> should have run many short runs rather than a long one. Anyway, please help
> me to continue with the remaining of this simulation.
>
> Thanks so much
> Kat
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Received on Sat Jan 14 2017 - 23:30:03 PST
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