Hi,
I am trying to build amber14/amberTools on RHEA, an OLCF (ORNL) commodity
cluster, with dual Intel® Xeon® E5-2650 CPUs, which uses modules.
The build was successful on the same system in serial, and all tests passed
after building.
However, when trying to build with mpi, I am exiting the make install from
the following folder:
make[2]: Entering directory
`/autofs/nccs-svm1_home2/adaa/AMBER/amber14/AmberTools/src/cifparse'
flex -t cifparse.l | sed 's/yy/cifp/g' > lex.cif.c
/ccs/home/adaa/AMBER/amber14/bin/yacc -v -d cifparse.y
make[2]: Leaving directory
`/autofs/nccs-svm1_home2/adaa/AMBER/amber14/AmberTools/src/cifparse'
make[1]: Leaving directory
`/autofs/nccs-svm1_home2/adaa/AMBER/amber14/AmberTools/src'
with the following error:
main.o: In function `create_file_names':
main.c:(.text+0x607): warning: the use of `mktemp' is dangerous, better use
`mkstemp'
/usr/bin/ld: reader.o(.text+0x5a): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x6c): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x73): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x84): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x5b1): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x5c9): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x5eb): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x60d): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x62f): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x651): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x669): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x68b): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x6ad): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x6cf): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x1590): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x15f7): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x1785): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x194f): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x1967): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x1976): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x1b70): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x1c41): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x1ffb): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x2002): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x2659): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x2693): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
/usr/bin/ld: reader.o(.text+0x26ac): unresolvable R_X86_64_PC32 relocation
against symbol `cache'
yacc:3249 terminated with signal 11 at PC=40abac SP=7fff87123600.
Backtrace:
/ccs/home/adaa/AMBER/amber14/bin/yacc[0x40abac]
/ccs/home/adaa/AMBER/amber14/bin/yacc[0x40ce6b]
/ccs/home/adaa/AMBER/amber14/bin/yacc[0x404dfd]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x7eff172bed1d]
/ccs/home/adaa/AMBER/amber14/bin/yacc[0x400ea9]
make[2]: *** [cifp.tab.c] Error 1
make[1]: *** [parallel] Error 2
make: *** [install] Error 2
Thanks for the help.
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Received on Fri Jan 13 2017 - 10:00:03 PST
