[AMBER] restrain protein with two different force constant

From: Khabiri, Morteza <khabiri.med.umich.edu>
Date: Tue, 10 Jan 2017 14:58:47 +0000


I have a protein with two domain. One domain exist in crystal structure but the other one is modeled.

In order to have a right conformation I would like to make both domains restrains but release the restrain gradually from the modeled domain. I don't see any option in amber documentation to do it automatically.

Is there any suggestion how can I set amber config file based on this plan?


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Received on Tue Jan 10 2017 - 07:00:03 PST
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