Re: [AMBER] failed to visualize trajectories in vmd.

From: Saman Yousuf ali <>
Date: Mon, 2 Jan 2017 15:32:57 +0000 (UTC)

Yes, I am sure. It was mdcrd.gz (binary file) and I have unzip this file using gunzip -9 md_simulation1.mdcrd.gz command. 

    On Monday, January 2, 2017 7:20 AM, David Case <> wrote:

 On Mon, Jan 02, 2017, Saman Yousuf ali wrote:

>   [trajin md_simulation1.mdcrd.gz]
> Error: Could not determine trajectory md_simulation1.mdcrd.gz format.

Something is wrong with your trajin file.  How did you create it?  Are you
sure it is indeed a gzipped file? (Try using 'gunzip' on this file).

There is something wrong with this file (since both VMD and cpptraj cannot
process it), but it is going to be difficult to debug the problem remotely.


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Received on Mon Jan 02 2017 - 08:00:02 PST
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