Hi,
I just downloaded Amber16, and was able to build and run it successfully
with the Gnu compiler.
Then I tried building with the Intel compiler (15.0.1) , the exact same
procedure, and am getting an error with the NetCDF build. The build
fails at this step:
/usr/local/intel/composer_xe_2015.1.133/bin/intel64/ifort -fPIC
-I/usr/local/apps/amber/amber16/include -o testp testp.f90
/usr/local/apps/amber/amber16/lib/libnetcdff.a
/usr/local/apps/amber/amber16/lib/libnetcdf.a
(full configure screentrace below, but I can reproduce the errors with
just the command above).
What's baffling is that all the functions mentioned in the error
messages are actually available in the netcdff.a library, e.g.
% nm /usr/local/apps/amber/amber16/lib/libnetcdff.a | grep
netcdf_mp_nf90_inq_libvers_
0000000000000010 T netcdf_mp_nf90_inq_libvers_
I've tried playing around with compile flags, but nothing seems to help.
Also tried using our local netcdf build, but that was unfortunately
compiled with Gnu, not Intel. I could build a NetCDF version with Intel,
but isn't that exactly what the Amber 16 build is doing anyway?
Any ideas or suggestions? Much appreciated,
Susan Chacko.
--------screentrace of configure --------
% ./configure intel
Checking for updates...
Checking for available patches online. This may take a few seconds...
Available AmberTools 16 patches:
No patches available
Available Amber 16 patches:
No patches available
Compatible Python found! Using /usr/local/bin/python
Obtaining the intel compiler suite versions, e.g.:
/usr/local/intel/composer_xe_2015.1.133/bin/intel64/icc -v
cc is /usr/local/intel/composer_xe_2015.1.133/bin/intel64/icc
fc is /usr/local/intel/composer_xe_2015.1.133/bin/intel64/ifort
The C version is 15.0.1
The Fortran version is 15.0.1
Testing the /usr/local/intel/composer_xe_2015.1.133/bin/intel64/icc
compiler:
/usr/local/intel/composer_xe_2015.1.133/bin/intel64/icc -fPIC
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c
OK
Testing the /usr/local/intel/composer_xe_2015.1.133/bin/intel64/icpc
compiler:
/usr/local/intel/composer_xe_2015.1.133/bin/intel64/icpc -fPIC -o
testp testp.cpp
OK
Testing the /usr/local/intel/composer_xe_2015.1.133/bin/intel64/ifort
compiler:
/usr/local/intel/composer_xe_2015.1.133/bin/intel64/ifort -fPIC
-O0 -o testp testp.f
OK
Testing mixed C/Fortran compilation:
/usr/local/intel/composer_xe_2015.1.133/bin/intel64/icc -fPIC
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o testp.c.o testp.c
/usr/local/intel/composer_xe_2015.1.133/bin/intel64/ifort -fPIC
-O0 -c -o testp.f.o testp.f
/usr/local/intel/composer_xe_2015.1.133/bin/intel64/icc -fPIC
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c.o testp.f.o
-lifport -lifcore -lsvml
OK
Testing pointer size:
/usr/local/intel/composer_xe_2015.1.133/bin/intel64/icc -fPIC
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o test_pointer_size
test_pointer_size.c
Detected 64 bit operating system.
Testing flex: OK
Checking NetCDF...
Using bundled NetCDF library.
NetCDF must be rebuilt.
Configuring NetCDF C interface (may be time-consuming)...
Compiling the NetCDF C interface (may be time-consuming)...
Configuring NetCDF Fortran interface (may be time-consuming)...
Compiling the NetCDF Fortran interface (may be time-consuming)...
Error: Could not compile with NetCDF Fortran interface.
/usr/local/intel/composer_xe_2015.1.133/bin/intel64/ifort -fPIC
-I/usr/local/apps/amber/amber16/include -o testp testp.f90
/usr/local/apps/amber/amber16/lib/libnetcdff.a
/usr/local/apps/amber/amber16/lib/libnetcdf.a
Compile error follows:
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_inq_libvers_':
netcdf.f90:(.text+0x25): undefined reference to `nf_inq_libvers_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_inq_base_pe_':
netcdf.f90:(.text+0x73): undefined reference to `nf_inq_base_pe_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_set_base_pe_':
netcdf.f90:(.text+0x83): undefined reference to `nf_set_base_pe_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_create_mp_':
netcdf.f90:(.text+0x93): undefined reference to `nf__create_mp_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_open_mp_':
netcdf.f90:(.text+0xa3): undefined reference to `nf__open_mp_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_set_fill_':
netcdf.f90:(.text+0xb3): undefined reference to `nf_set_fill_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_redef_':
netcdf.f90:(.text+0xc3): undefined reference to `nf_redef_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_enddef_':
netcdf.f90:(.text+0x17e): undefined reference to `nf__enddef_'
netcdf.f90:(.text+0x18c): undefined reference to `nf_enddef_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_sync_':
netcdf.f90:(.text+0x1a3): undefined reference to `nf_sync_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_close_':
netcdf.f90:(.text+0x1b3): undefined reference to `nf_close_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_delete_':
netcdf.f90:(.text+0x1c3): undefined reference to `nf_delete_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_inquire_':
netcdf.f90:(.text+0x207): undefined reference to `nf_inq_'
netcdf.f90:(.text+0x24b): undefined reference to `nf_inq_format_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_open_':
netcdf.f90:(.text+0x281): undefined reference to `nf__open_'
netcdf.f90:(.text+0x28e): undefined reference to `nf_open_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_create_':
netcdf.f90:(.text+0x2da): undefined reference to `nf_create_'
netcdf.f90:(.text+0x31b): undefined reference to `nf__create_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_def_dim_':
netcdf.f90:(.text+0x343): undefined reference to `nf_def_dim_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_inq_dimid_':
netcdf.f90:(.text+0x353): undefined reference to `nf_inq_dimid_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_rename_dim_':
netcdf.f90:(.text+0x363): undefined reference to `nf_rename_dim_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_inquire_dimension_':
netcdf.f90:(.text+0x3a0): undefined reference to `nf_inq_dim_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_copy_att_':
netcdf.f90:(.text+0x403): undefined reference to `nf_copy_att_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_rename_att_':
netcdf.f90:(.text+0x413): undefined reference to `nf_rename_att_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_del_att_':
netcdf.f90:(.text+0x423): undefined reference to `nf_del_att_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_inq_attname_':
netcdf.f90:(.text+0x433): undefined reference to `nf_inq_attname_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_inquire_attribute_':
netcdf.f90:(.text+0x474): undefined reference to `nf_inq_attid_'
netcdf.f90:(.text+0x492): undefined reference to `nf_inq_att_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_att_text_':
netcdf.f90:(.text+0x544): undefined reference to `nf_put_att_text_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_att_text_':
netcdf.f90:(.text+0x5ca): undefined reference to `nf_get_att_text_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_att_onebyteint_':
netcdf.f90:(.text+0x7df): undefined reference to `nf_put_att_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_att_one_onebyteint_':
netcdf.f90:(.text+0x841): undefined reference to `nf_put_att_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_att_onebyteint_':
netcdf.f90:(.text+0xa77): undefined reference to `nf_get_att_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_att_one_onebyteint_':
netcdf.f90:(.text+0xcff): undefined reference to `nf_get_att_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_att_twobyteint_':
netcdf.f90:(.text+0xebf): undefined reference to `nf_put_att_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_att_one_twobyteint_':
netcdf.f90:(.text+0xf17): undefined reference to `nf_put_att_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_att_twobyteint_':
netcdf.f90:(.text+0x10c9): undefined reference to `nf_get_att_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_att_one_twobyteint_':
netcdf.f90:(.text+0x12ff): undefined reference to `nf_get_att_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_att_fourbyteint_':
netcdf.f90:(.text+0x1467): undefined reference to `nf_put_att_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_att_one_fourbyteint_':
netcdf.f90:(.text+0x14ca): undefined reference to `nf_put_att_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_att_fourbyteint_':
netcdf.f90:(.text+0x1536): undefined reference to `nf_get_att_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_att_one_fourbyteint_':
netcdf.f90:(.text+0x16ef): undefined reference to `nf_get_att_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_att_eightbyteint_':
netcdf.f90:(.text+0x1895): undefined reference to `nf_put_att_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_att_one_eightbyteint_':
netcdf.f90:(.text+0x18f5): undefined reference to `nf_put_att_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_att_eightbyteint_':
netcdf.f90:(.text+0x1957): undefined reference to `nf_get_att_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_att_one_eightbyteint_':
netcdf.f90:(.text+0x1b2f): undefined reference to `nf_get_att_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_att_fourbytereal_':
netcdf.f90:(.text+0x1cff): undefined reference to `nf_put_att_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_att_one_fourbytereal_':
netcdf.f90:(.text+0x1d55): undefined reference to `nf_put_att_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_att_fourbytereal_':
netcdf.f90:(.text+0x1f1c): undefined reference to `nf_get_att_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_att_one_fourbytereal_':
netcdf.f90:(.text+0x20cf): undefined reference to `nf_get_att_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_att_eightbytereal_':
netcdf.f90:(.text+0x223e): undefined reference to `nf_put_att_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_att_one_eightbytereal_':
netcdf.f90:(.text+0x2296): undefined reference to `nf_put_att_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_att_eightbytereal_':
netcdf.f90:(.text+0x23f5): undefined reference to `nf_get_att_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_att_one_eightbytereal_':
netcdf.f90:(.text+0x251f): undefined reference to `nf_get_att_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_def_var_scalar_':
netcdf.f90:(.text+0x255c): undefined reference to `nf_def_var_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_def_var_onedim_':
netcdf.f90:(.text+0x2595): undefined reference to `nf_def_var_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_def_var_manydims_':
netcdf.f90:(.text+0x26f6): undefined reference to `nf_def_var_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_inq_varid_':
netcdf.f90:(.text+0x2733): undefined reference to `nf_inq_varid_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_inquire_variable_':
netcdf.f90:(.text+0x2794): undefined reference to `nf_inq_var_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_rename_var_':
netcdf.f90:(.text+0x2a13): undefined reference to `nf_rename_var_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_text_':
netcdf.f90:(.text+0x2ef2): undefined reference to `nf_put_vars_text_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_text_':
netcdf.f90:(.text+0x3402): undefined reference to `nf_get_vars_text_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_1d_text_':
netcdf.f90:(.text+0x39d1): undefined reference to `nf_put_varm_text_'
netcdf.f90:(.text+0x3a38): undefined reference to `nf_put_vars_text_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_2d_text_':
netcdf.f90:(.text+0x4034): undefined reference to `nf_put_varm_text_'
netcdf.f90:(.text+0x409b): undefined reference to `nf_put_vars_text_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_3d_text_':
netcdf.f90:(.text+0x4786): undefined reference to `nf_put_varm_text_'
netcdf.f90:(.text+0x47ed): undefined reference to `nf_put_vars_text_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_4d_text_':
netcdf.f90:(.text+0x4ebb): undefined reference to `nf_put_varm_text_'
netcdf.f90:(.text+0x4f23): undefined reference to `nf_put_vars_text_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_5d_text_':
netcdf.f90:(.text+0x560d): undefined reference to `nf_put_varm_text_'
netcdf.f90:(.text+0x5675): undefined reference to `nf_put_vars_text_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_6d_text_':
netcdf.f90:(.text+0x5d8e): undefined reference to `nf_put_varm_text_'
netcdf.f90:(.text+0x5df6): undefined reference to `nf_put_vars_text_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_7d_text_':
netcdf.f90:(.text+0x6545): undefined reference to `nf_put_varm_text_'
netcdf.f90:(.text+0x65ad): undefined reference to `nf_put_vars_text_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_1d_text_':
netcdf.f90:(.text+0x6b51): undefined reference to `nf_get_varm_text_'
netcdf.f90:(.text+0x6bc1): undefined reference to `nf_get_vars_text_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_2d_text_':
netcdf.f90:(.text+0x71b4): undefined reference to `nf_get_varm_text_'
netcdf.f90:(.text+0x721b): undefined reference to `nf_get_vars_text_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_3d_text_':
netcdf.f90:(.text+0x7906): undefined reference to `nf_get_varm_text_'
netcdf.f90:(.text+0x796d): undefined reference to `nf_get_vars_text_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_4d_text_':
netcdf.f90:(.text+0x803b): undefined reference to `nf_get_varm_text_'
netcdf.f90:(.text+0x80a3): undefined reference to `nf_get_vars_text_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_5d_text_':
netcdf.f90:(.text+0x878d): undefined reference to `nf_get_varm_text_'
netcdf.f90:(.text+0x87f5): undefined reference to `nf_get_vars_text_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_6d_text_':
netcdf.f90:(.text+0x8f0e): undefined reference to `nf_get_varm_text_'
netcdf.f90:(.text+0x8f76): undefined reference to `nf_get_vars_text_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_7d_text_':
netcdf.f90:(.text+0x96c5): undefined reference to `nf_get_varm_text_'
netcdf.f90:(.text+0x972d): undefined reference to `nf_get_vars_text_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_onebyteint_':
netcdf.f90:(.text+0x98cc): undefined reference to `nf_put_var1_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_twobyteint_':
netcdf.f90:(.text+0x9a5c): undefined reference to `nf_put_var1_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_fourbyteint_':
netcdf.f90:(.text+0x9bff): undefined reference to `nf_put_var1_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_fourbytereal_':
netcdf.f90:(.text+0x9d9c): undefined reference to `nf_put_var1_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_eightbytereal_':
netcdf.f90:(.text+0x9f2c): undefined reference to `nf_put_var1_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_onebyteint_':
netcdf.f90:(.text+0xa0bc): undefined reference to `nf_get_var1_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_twobyteint_':
netcdf.f90:(.text+0xa24c): undefined reference to `nf_get_var1_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_fourbyteint_':
netcdf.f90:(.text+0xa3e6): undefined reference to `nf_get_var1_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_fourbytereal_':
netcdf.f90:(.text+0xa58c): undefined reference to `nf_get_var1_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_eightbytereal_':
netcdf.f90:(.text+0xa71c): undefined reference to `nf_get_var1_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_1d_onebyteint_':
netcdf.f90:(.text+0xaf39): undefined reference to `nf_put_varm_int1_'
netcdf.f90:(.text+0xb14f): undefined reference to `nf_put_vars_int1_'
netcdf.f90:(.text+0xb32c): undefined reference to `nf_put_vara_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_2d_onebyteint_':
netcdf.f90:(.text+0xbb8e): undefined reference to `nf_put_varm_int1_'
netcdf.f90:(.text+0xbff2): undefined reference to `nf_put_vars_int1_'
netcdf.f90:(.text+0xc408): undefined reference to `nf_put_vara_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_3d_onebyteint_':
netcdf.f90:(.text+0xd35b): undefined reference to `nf_put_varm_int1_'
netcdf.f90:(.text+0xd988): undefined reference to `nf_put_vars_int1_'
netcdf.f90:(.text+0xdf6d): undefined reference to `nf_put_vara_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_4d_onebyteint_':
netcdf.f90:(.text+0xe7d5): undefined reference to `nf_put_varm_int1_'
netcdf.f90:(.text+0xe85a): undefined reference to `nf_put_vars_int1_'
netcdf.f90:(.text+0xe897): undefined reference to `nf_put_vara_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_5d_onebyteint_':
netcdf.f90:(.text+0xf00b): undefined reference to `nf_put_varm_int1_'
netcdf.f90:(.text+0xf090): undefined reference to `nf_put_vars_int1_'
netcdf.f90:(.text+0xf0cd): undefined reference to `nf_put_vara_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_6d_onebyteint_':
netcdf.f90:(.text+0xf86e): undefined reference to `nf_put_varm_int1_'
netcdf.f90:(.text+0xf8f3): undefined reference to `nf_put_vars_int1_'
netcdf.f90:(.text+0xf930): undefined reference to `nf_put_vara_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_7d_onebyteint_':
netcdf.f90:(.text+0x100fd): undefined reference to `nf_put_varm_int1_'
netcdf.f90:(.text+0x1017e): undefined reference to `nf_put_vars_int1_'
netcdf.f90:(.text+0x101b9): undefined reference to `nf_put_vara_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_1d_twobyteint_':
netcdf.f90:(.text+0x10969): undefined reference to `nf_put_varm_int2_'
netcdf.f90:(.text+0x10b0d): undefined reference to `nf_put_vars_int2_'
netcdf.f90:(.text+0x10c66): undefined reference to `nf_put_vara_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_2d_twobyteint_':
netcdf.f90:(.text+0x114aa): undefined reference to `nf_put_varm_int2_'
netcdf.f90:(.text+0x11871): undefined reference to `nf_put_vars_int2_'
netcdf.f90:(.text+0x11bfa): undefined reference to `nf_put_vara_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_3d_twobyteint_':
netcdf.f90:(.text+0x12a23): undefined reference to `nf_put_varm_int2_'
netcdf.f90:(.text+0x12fd3): undefined reference to `nf_put_vars_int2_'
netcdf.f90:(.text+0x1353c): undefined reference to `nf_put_vara_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_4d_twobyteint_':
netcdf.f90:(.text+0x13da5): undefined reference to `nf_put_varm_int2_'
netcdf.f90:(.text+0x13e2a): undefined reference to `nf_put_vars_int2_'
netcdf.f90:(.text+0x13e67): undefined reference to `nf_put_vara_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_5d_twobyteint_':
netcdf.f90:(.text+0x145db): undefined reference to `nf_put_varm_int2_'
netcdf.f90:(.text+0x14660): undefined reference to `nf_put_vars_int2_'
netcdf.f90:(.text+0x1469d): undefined reference to `nf_put_vara_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_6d_twobyteint_':
netcdf.f90:(.text+0x14e3e): undefined reference to `nf_put_varm_int2_'
netcdf.f90:(.text+0x14ec3): undefined reference to `nf_put_vars_int2_'
netcdf.f90:(.text+0x14f00): undefined reference to `nf_put_vara_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_7d_twobyteint_':
netcdf.f90:(.text+0x156cd): undefined reference to `nf_put_varm_int2_'
netcdf.f90:(.text+0x1574e): undefined reference to `nf_put_vars_int2_'
netcdf.f90:(.text+0x15789): undefined reference to `nf_put_vara_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_1d_fourbyteint_':
netcdf.f90:(.text+0x15ef5): undefined reference to `nf_put_varm_int_'
netcdf.f90:(.text+0x16056): undefined reference to `nf_put_vars_int_'
netcdf.f90:(.text+0x1616a): undefined reference to `nf_put_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_2d_fourbyteint_':
netcdf.f90:(.text+0x16954): undefined reference to `nf_put_varm_int_'
netcdf.f90:(.text+0x16c8d): undefined reference to `nf_put_vars_int_'
netcdf.f90:(.text+0x16f8f): undefined reference to `nf_put_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_3d_fourbyteint_':
netcdf.f90:(.text+0x17fee): undefined reference to `nf_put_varm_int_'
netcdf.f90:(.text+0x18561): undefined reference to `nf_put_vars_int_'
netcdf.f90:(.text+0x18aa5): undefined reference to `nf_put_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_4d_fourbyteint_':
netcdf.f90:(.text+0x1992a): undefined reference to `nf_put_varm_int_'
netcdf.f90:(.text+0x19f93): undefined reference to `nf_put_vars_int_'
netcdf.f90:(.text+0x1a5f7): undefined reference to `nf_put_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_5d_fourbyteint_':
netcdf.f90:(.text+0x1b71a): undefined reference to `nf_put_varm_int_'
netcdf.f90:(.text+0x1be5c): undefined reference to `nf_put_vars_int_'
netcdf.f90:(.text+0x1c585): undefined reference to `nf_put_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_6d_fourbyteint_':
netcdf.f90:(.text+0x1d703): undefined reference to `nf_put_varm_int_'
netcdf.f90:(.text+0x1dfd0): undefined reference to `nf_put_vars_int_'
netcdf.f90:(.text+0x1e874): undefined reference to `nf_put_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_7d_fourbyteint_':
netcdf.f90:(.text+0x1fc93): undefined reference to `nf_put_varm_int_'
netcdf.f90:(.text+0x206a2): undefined reference to `nf_put_vars_int_'
netcdf.f90:(.text+0x210a9): undefined reference to `nf_put_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_1d_fourbytereal_':
netcdf.f90:(.text+0x21a4f): undefined reference to `nf_put_varm_real_'
netcdf.f90:(.text+0x21bfc): undefined reference to `nf_put_vars_real_'
netcdf.f90:(.text+0x21d5c): undefined reference to `nf_put_vara_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_2d_fourbytereal_':
netcdf.f90:(.text+0x225a4): undefined reference to `nf_put_varm_real_'
netcdf.f90:(.text+0x22978): undefined reference to `nf_put_vars_real_'
netcdf.f90:(.text+0x22cff): undefined reference to `nf_put_vara_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_3d_fourbytereal_':
netcdf.f90:(.text+0x23b3b): undefined reference to `nf_put_varm_real_'
netcdf.f90:(.text+0x240ea): undefined reference to `nf_put_vars_real_'
netcdf.f90:(.text+0x24653): undefined reference to `nf_put_vara_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_4d_fourbytereal_':
netcdf.f90:(.text+0x24ec5): undefined reference to `nf_put_varm_real_'
netcdf.f90:(.text+0x24f4a): undefined reference to `nf_put_vars_real_'
netcdf.f90:(.text+0x24f87): undefined reference to `nf_put_vara_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_5d_fourbytereal_':
netcdf.f90:(.text+0x256fb): undefined reference to `nf_put_varm_real_'
netcdf.f90:(.text+0x25780): undefined reference to `nf_put_vars_real_'
netcdf.f90:(.text+0x257bd): undefined reference to `nf_put_vara_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_6d_fourbytereal_':
netcdf.f90:(.text+0x25f5e): undefined reference to `nf_put_varm_real_'
netcdf.f90:(.text+0x25fe3): undefined reference to `nf_put_vars_real_'
netcdf.f90:(.text+0x26020): undefined reference to `nf_put_vara_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_7d_fourbytereal_':
netcdf.f90:(.text+0x267ed): undefined reference to `nf_put_varm_real_'
netcdf.f90:(.text+0x2686e): undefined reference to `nf_put_vars_real_'
netcdf.f90:(.text+0x268a9): undefined reference to `nf_put_vara_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_1d_eightbytereal_':
netcdf.f90:(.text+0x27028): undefined reference to `nf_put_varm_double_'
netcdf.f90:(.text+0x2719e): undefined reference to `nf_put_vars_double_'
netcdf.f90:(.text+0x272c8): undefined reference to `nf_put_vara_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_2d_eightbytereal_':
netcdf.f90:(.text+0x27b15): undefined reference to `nf_put_varm_double_'
netcdf.f90:(.text+0x27e82): undefined reference to `nf_put_vars_double_'
netcdf.f90:(.text+0x281a1): undefined reference to `nf_put_vara_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_3d_eightbytereal_':
netcdf.f90:(.text+0x28f03): undefined reference to `nf_put_varm_double_'
netcdf.f90:(.text+0x2945c): undefined reference to `nf_put_vars_double_'
netcdf.f90:(.text+0x2996f): undefined reference to `nf_put_vara_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_4d_eightbytereal_':
netcdf.f90:(.text+0x2a1d5): undefined reference to `nf_put_varm_double_'
netcdf.f90:(.text+0x2a25a): undefined reference to `nf_put_vars_double_'
netcdf.f90:(.text+0x2a297): undefined reference to `nf_put_vara_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_5d_eightbytereal_':
netcdf.f90:(.text+0x2aa0b): undefined reference to `nf_put_varm_double_'
netcdf.f90:(.text+0x2aa90): undefined reference to `nf_put_vars_double_'
netcdf.f90:(.text+0x2aacd): undefined reference to `nf_put_vara_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_6d_eightbytereal_':
netcdf.f90:(.text+0x2b26e): undefined reference to `nf_put_varm_double_'
netcdf.f90:(.text+0x2b2f3): undefined reference to `nf_put_vars_double_'
netcdf.f90:(.text+0x2b330): undefined reference to `nf_put_vara_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_7d_eightbytereal_':
netcdf.f90:(.text+0x2bafd): undefined reference to `nf_put_varm_double_'
netcdf.f90:(.text+0x2bb7e): undefined reference to `nf_put_vars_double_'
netcdf.f90:(.text+0x2bbb9): undefined reference to `nf_put_vara_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_1d_onebyteint_':
netcdf.f90:(.text+0x2c414): undefined reference to `nf_get_varm_int1_'
netcdf.f90:(.text+0x2c87e): undefined reference to `nf_get_vars_int1_'
netcdf.f90:(.text+0x2ccb3): undefined reference to `nf_get_vara_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_2d_onebyteint_':
netcdf.f90:(.text+0x2d75b): undefined reference to `nf_get_varm_int1_'
netcdf.f90:(.text+0x2e067): undefined reference to `nf_get_vars_int1_'
netcdf.f90:(.text+0x2e92c): undefined reference to `nf_get_vara_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_3d_onebyteint_':
netcdf.f90:(.text+0x2fd4e): undefined reference to `nf_get_varm_int1_'
netcdf.f90:(.text+0x30a5c): undefined reference to `nf_get_vars_int1_'
netcdf.f90:(.text+0x31726): undefined reference to `nf_get_vara_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_4d_onebyteint_':
netcdf.f90:(.text+0x32615): undefined reference to `nf_get_varm_int1_'
netcdf.f90:(.text+0x3269a): undefined reference to `nf_get_vars_int1_'
netcdf.f90:(.text+0x326d7): undefined reference to `nf_get_vara_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_5d_onebyteint_':
netcdf.f90:(.text+0x32e4b): undefined reference to `nf_get_varm_int1_'
netcdf.f90:(.text+0x32ed0): undefined reference to `nf_get_vars_int1_'
netcdf.f90:(.text+0x32f0d): undefined reference to `nf_get_vara_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_6d_onebyteint_':
netcdf.f90:(.text+0x336ae): undefined reference to `nf_get_varm_int1_'
netcdf.f90:(.text+0x33733): undefined reference to `nf_get_vars_int1_'
netcdf.f90:(.text+0x33770): undefined reference to `nf_get_vara_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_7d_onebyteint_':
netcdf.f90:(.text+0x33f3d): undefined reference to `nf_get_varm_int1_'
netcdf.f90:(.text+0x33fbe): undefined reference to `nf_get_vars_int1_'
netcdf.f90:(.text+0x33ff9): undefined reference to `nf_get_vara_int1_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_1d_twobyteint_':
netcdf.f90:(.text+0x347d7): undefined reference to `nf_get_varm_int2_'
netcdf.f90:(.text+0x34b88): undefined reference to `nf_get_vars_int2_'
netcdf.f90:(.text+0x34ef4): undefined reference to `nf_get_vara_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_2d_twobyteint_':
netcdf.f90:(.text+0x3596a): undefined reference to `nf_get_varm_int2_'
netcdf.f90:(.text+0x360ad): undefined reference to `nf_get_vars_int2_'
netcdf.f90:(.text+0x367a5): undefined reference to `nf_get_vara_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_3d_twobyteint_':
netcdf.f90:(.text+0x37983): undefined reference to `nf_get_varm_int2_'
netcdf.f90:(.text+0x384ec): undefined reference to `nf_get_vars_int2_'
netcdf.f90:(.text+0x39016): undefined reference to `nf_get_vara_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_4d_twobyteint_':
netcdf.f90:(.text+0x39dd5): undefined reference to `nf_get_varm_int2_'
netcdf.f90:(.text+0x39e5a): undefined reference to `nf_get_vars_int2_'
netcdf.f90:(.text+0x39e97): undefined reference to `nf_get_vara_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_5d_twobyteint_':
netcdf.f90:(.text+0x3a60b): undefined reference to `nf_get_varm_int2_'
netcdf.f90:(.text+0x3a690): undefined reference to `nf_get_vars_int2_'
netcdf.f90:(.text+0x3a6cd): undefined reference to `nf_get_vara_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_6d_twobyteint_':
netcdf.f90:(.text+0x3ae6e): undefined reference to `nf_get_varm_int2_'
netcdf.f90:(.text+0x3aef3): undefined reference to `nf_get_vars_int2_'
netcdf.f90:(.text+0x3af30): undefined reference to `nf_get_vara_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_7d_twobyteint_':
netcdf.f90:(.text+0x3b6fd): undefined reference to `nf_get_varm_int2_'
netcdf.f90:(.text+0x3b77e): undefined reference to `nf_get_vars_int2_'
netcdf.f90:(.text+0x3b7b9): undefined reference to `nf_get_vara_int2_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_1d_fourbyteint_':
netcdf.f90:(.text+0x3be5e): undefined reference to `nf_get_varm_int_'
netcdf.f90:(.text+0x3c10d): undefined reference to `nf_get_vars_int_'
netcdf.f90:(.text+0x3c12d): undefined reference to `nf_get_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_2d_fourbyteint_':
netcdf.f90:(.text+0x3c825): undefined reference to `nf_get_varm_int_'
netcdf.f90:(.text+0x3cc60): undefined reference to `nf_get_vars_int_'
netcdf.f90:(.text+0x3cc80): undefined reference to `nf_get_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_3d_fourbyteint_':
netcdf.f90:(.text+0x3d494): undefined reference to `nf_get_varm_int_'
netcdf.f90:(.text+0x3db9e): undefined reference to `nf_get_vars_int_'
netcdf.f90:(.text+0x3dbc1): undefined reference to `nf_get_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_4d_fourbyteint_':
netcdf.f90:(.text+0x3e3cb): undefined reference to `nf_get_varm_int_'
netcdf.f90:(.text+0x3ec4b): undefined reference to `nf_get_vars_int_'
netcdf.f90:(.text+0x3ec79): undefined reference to `nf_get_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_5d_fourbyteint_':
netcdf.f90:(.text+0x3f469): undefined reference to `nf_get_varm_int_'
netcdf.f90:(.text+0x3fe2c): undefined reference to `nf_get_vars_int_'
netcdf.f90:(.text+0x3fe5d): undefined reference to `nf_get_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_6d_fourbyteint_':
netcdf.f90:(.text+0x4069c): undefined reference to `nf_get_varm_int_'
netcdf.f90:(.text+0x411b2): undefined reference to `nf_get_vars_int_'
netcdf.f90:(.text+0x411e3): undefined reference to `nf_get_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_7d_fourbyteint_':
netcdf.f90:(.text+0x41a56): undefined reference to `nf_get_varm_int_'
netcdf.f90:(.text+0x42723): undefined reference to `nf_get_vars_int_'
netcdf.f90:(.text+0x42754): undefined reference to `nf_get_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_1d_fourbytereal_':
netcdf.f90:(.text+0x42f3f): undefined reference to `nf_get_varm_real_'
netcdf.f90:(.text+0x4327d): undefined reference to `nf_get_vars_real_'
netcdf.f90:(.text+0x4357c): undefined reference to `nf_get_vara_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_2d_fourbytereal_':
netcdf.f90:(.text+0x43f88): undefined reference to `nf_get_varm_real_'
netcdf.f90:(.text+0x44717): undefined reference to `nf_get_vars_real_'
netcdf.f90:(.text+0x44e4d): undefined reference to `nf_get_vara_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_3d_fourbytereal_':
netcdf.f90:(.text+0x4606b): undefined reference to `nf_get_varm_real_'
netcdf.f90:(.text+0x46c24): undefined reference to `nf_get_vars_real_'
netcdf.f90:(.text+0x4779e): undefined reference to `nf_get_vara_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_4d_fourbytereal_':
netcdf.f90:(.text+0x48585): undefined reference to `nf_get_varm_real_'
netcdf.f90:(.text+0x4860a): undefined reference to `nf_get_vars_real_'
netcdf.f90:(.text+0x48647): undefined reference to `nf_get_vara_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_5d_fourbytereal_':
netcdf.f90:(.text+0x48dbb): undefined reference to `nf_get_varm_real_'
netcdf.f90:(.text+0x48e40): undefined reference to `nf_get_vars_real_'
netcdf.f90:(.text+0x48e7d): undefined reference to `nf_get_vara_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_6d_fourbytereal_':
netcdf.f90:(.text+0x4961e): undefined reference to `nf_get_varm_real_'
netcdf.f90:(.text+0x496a3): undefined reference to `nf_get_vars_real_'
netcdf.f90:(.text+0x496e0): undefined reference to `nf_get_vara_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_7d_fourbytereal_':
netcdf.f90:(.text+0x49ead): undefined reference to `nf_get_varm_real_'
netcdf.f90:(.text+0x49f2e): undefined reference to `nf_get_vars_real_'
netcdf.f90:(.text+0x49f69): undefined reference to `nf_get_vara_real_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_1d_eightbytereal_':
netcdf.f90:(.text+0x4a708): undefined reference to `nf_get_varm_double_'
netcdf.f90:(.text+0x4a975): undefined reference to `nf_get_vars_double_'
netcdf.f90:(.text+0x4ab94): undefined reference to `nf_get_vara_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_2d_eightbytereal_':
netcdf.f90:(.text+0x4b509): undefined reference to `nf_get_varm_double_'
netcdf.f90:(.text+0x4bb85): undefined reference to `nf_get_vars_double_'
netcdf.f90:(.text+0x4c1b8): undefined reference to `nf_get_vara_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_3d_eightbytereal_':
netcdf.f90:(.text+0x4d249): undefined reference to `nf_get_varm_double_'
netcdf.f90:(.text+0x4dcfc): undefined reference to `nf_get_vars_double_'
netcdf.f90:(.text+0x4e76f): undefined reference to `nf_get_vara_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_4d_eightbytereal_':
netcdf.f90:(.text+0x4f4d5): undefined reference to `nf_get_varm_double_'
netcdf.f90:(.text+0x4f55a): undefined reference to `nf_get_vars_double_'
netcdf.f90:(.text+0x4f597): undefined reference to `nf_get_vara_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_5d_eightbytereal_':
netcdf.f90:(.text+0x4fd0b): undefined reference to `nf_get_varm_double_'
netcdf.f90:(.text+0x4fd90): undefined reference to `nf_get_vars_double_'
netcdf.f90:(.text+0x4fdcd): undefined reference to `nf_get_vara_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_6d_eightbytereal_':
netcdf.f90:(.text+0x5056e): undefined reference to `nf_get_varm_double_'
netcdf.f90:(.text+0x505f3): undefined reference to `nf_get_vars_double_'
netcdf.f90:(.text+0x50630): undefined reference to `nf_get_vara_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_7d_eightbytereal_':
netcdf.f90:(.text+0x50dfd): undefined reference to `nf_get_varm_double_'
netcdf.f90:(.text+0x50e7e): undefined reference to `nf_get_vars_double_'
netcdf.f90:(.text+0x50eb9): undefined reference to `nf_get_vara_double_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_1d_eightbyteint_':
netcdf.f90:(.text+0x5167c): undefined reference to `nf_put_varm_int_'
netcdf.f90:(.text+0x5182d): undefined reference to `nf_put_vars_int_'
netcdf.f90:(.text+0x51989): undefined reference to `nf_put_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_2d_eightbyteint_':
netcdf.f90:(.text+0x521d8): undefined reference to `nf_put_varm_int_'
netcdf.f90:(.text+0x5257e): undefined reference to `nf_put_vars_int_'
netcdf.f90:(.text+0x528d3): undefined reference to `nf_put_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_3d_eightbyteint_':
netcdf.f90:(.text+0x539a1): undefined reference to `nf_put_varm_int_'
netcdf.f90:(.text+0x53f58): undefined reference to `nf_put_vars_int_'
netcdf.f90:(.text+0x544dd): undefined reference to `nf_put_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_4d_eightbyteint_':
netcdf.f90:(.text+0x553a6): undefined reference to `nf_put_varm_int_'
netcdf.f90:(.text+0x55a4c): undefined reference to `nf_put_vars_int_'
netcdf.f90:(.text+0x560cb): undefined reference to `nf_put_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_5d_eightbyteint_':
netcdf.f90:(.text+0x57248): undefined reference to `nf_put_varm_int_'
netcdf.f90:(.text+0x579d5): undefined reference to `nf_put_vars_int_'
netcdf.f90:(.text+0x5814e): undefined reference to `nf_put_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_6d_eightbyteint_':
netcdf.f90:(.text+0x592fa): undefined reference to `nf_put_varm_int_'
netcdf.f90:(.text+0x59c03): undefined reference to `nf_put_vars_int_'
netcdf.f90:(.text+0x5a4dc): undefined reference to `nf_put_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_7d_eightbyteint_':
netcdf.f90:(.text+0x5b94d): undefined reference to `nf_put_varm_int_'
netcdf.f90:(.text+0x5c3a7): undefined reference to `nf_put_vars_int_'
netcdf.f90:(.text+0x5cdfc): undefined reference to `nf_put_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_1d_eightbyteint_':
netcdf.f90:(.text+0x5d67e): undefined reference to `nf_get_varm_int_'
netcdf.f90:(.text+0x5d95f): undefined reference to `nf_get_vars_int_'
netcdf.f90:(.text+0x5d97f): undefined reference to `nf_get_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_2d_eightbyteint_':
netcdf.f90:(.text+0x5e099): undefined reference to `nf_get_varm_int_'
netcdf.f90:(.text+0x5e444): undefined reference to `nf_get_vars_int_'
netcdf.f90:(.text+0x5e467): undefined reference to `nf_get_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_3d_eightbyteint_':
netcdf.f90:(.text+0x5ec6d): undefined reference to `nf_get_varm_int_'
netcdf.f90:(.text+0x5f31a): undefined reference to `nf_get_vars_int_'
netcdf.f90:(.text+0x5f33d): undefined reference to `nf_get_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_4d_eightbyteint_':
netcdf.f90:(.text+0x5fb4b): undefined reference to `nf_get_varm_int_'
netcdf.f90:(.text+0x60357): undefined reference to `nf_get_vars_int_'
netcdf.f90:(.text+0x60385): undefined reference to `nf_get_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_5d_eightbyteint_':
netcdf.f90:(.text+0x60b79): undefined reference to `nf_get_varm_int_'
netcdf.f90:(.text+0x614ed): undefined reference to `nf_get_vars_int_'
netcdf.f90:(.text+0x6151e): undefined reference to `nf_get_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_6d_eightbyteint_':
netcdf.f90:(.text+0x61d57): undefined reference to `nf_get_varm_int_'
netcdf.f90:(.text+0x62854): undefined reference to `nf_get_vars_int_'
netcdf.f90:(.text+0x62885): undefined reference to `nf_get_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_7d_eightbyteint_':
netcdf.f90:(.text+0x630f6): undefined reference to `nf_get_varm_int_'
netcdf.f90:(.text+0x63d74): undefined reference to `nf_get_vars_int_'
netcdf.f90:(.text+0x63da5): undefined reference to `nf_get_vara_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_put_var_eightbyteint_':
netcdf.f90:(.text+0x63f5f): undefined reference to `nf_put_var1_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_get_var_eightbyteint_':
netcdf.f90:(.text+0x64106): undefined reference to `nf_get_var1_int_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_abort_':
netcdf.f90:(.text+0x64133): undefined reference to `nf_abort_'
/usr/local/apps/amber/amber16/lib/libnetcdff.a(netcdf.o): In function
`netcdf_mp_nf90_strerror_':
netcdf.f90:(.text+0x64155): undefined reference to `nf_strerror_'
--
Susan Chacko, Ph.D.
HPC . NIH Staff
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AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Dec 20 2016 - 09:00:02 PST
