Dear all,
I have a problem with the building of UDP-Rhamnose in xleap. I have the pdb
of the nucleotides, but when I try to put it in Xleap, I obtain error
messages as show below:
FATAL: Atom .R<UPG 2>.A<N1 1> does not have a type.
FATAL: Atom .R<UPG 2>.A<C2 2> does not have a type.
FATAL: Atom .R<UPG 2>.A<N3 3> does not have a type
.....
I think that the problem is the name, xleap don't recognize the UPG name.
Thus, I have changed the library (I have tried to use .gaff, .ff10,
.ff12SB, .ff99SB), but the problem is the same!!
Can you help me?? Do you know how can I build the correct UDP-rhamnose?
Thanks in advance.
Imma
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Received on Wed Dec 14 2016 - 07:30:03 PST
