Share document of same.
Thanks & Regards,
Yasir Israr
-----Original Message-----
From: Hai Nguyen [mailto:nhai.qn.gmail.com]
Sent: Saturday, December 10, 2016 2:18 PM
To: AMBER Mailing List
Cc: elvis_bcp.elvismartis.in
Subject: Re: [AMBER] Installation of AMBER on Centos Rocks 6.2
so do it (serial) first then.
page 23 of amber16 manual says:
"Do not choose any parallel options at this step! You will need to install the serial version first; options for parallel builds are described below at Step 8. "
I think we should make that clearer (@Dave: bring it to the top of instalation guide? Or adding checking script to make sure user already build serially?)
Hai
On Sat, Dec 10, 2016 at 3:43 AM, <yasir.orionsolutions.co.in> wrote:
> No. Because I don't want to build serial. I want parallel only.
>
> Thanks & Regards,
> Yasir Israr
>
> -----Original Message-----
> From: Hai Nguyen [mailto:nhai.qn.gmail.com]
> Sent: Saturday, December 10, 2016 2:10 PM
> To: AMBER Mailing List
> Cc: elvis_bcp.elvismartis.in
> Subject: Re: [AMBER] Installation of AMBER on Centos Rocks 6.2
>
> have you performed serial build yet?
>
> Hai
>
> On Sat, Dec 10, 2016 at 3:36 AM, <yasir.orionsolutions.co.in> wrote:
>
> > Hi Elvis
> > Below is the process which I'm doing & getting error log file attached.
> >
> > First I check mpi using below command. (Output in Files Attached)
> > mpif90 -show
> > mpicc -show
> >
> > Then set AMBERHOME properly.
> > cd $AMBERHOME
> > ./configure -mpi gnu (As I'm using OpenMPI of Rocks 6.2) make
> > install
> >
> > After this I've set DO_PARALLEL
> > export DO_PARALLEL='mpirun -np 8'
> > make test (Out of make test attached in mail)
> >
> > #But I've not seen any amber.sh or amber.csh file on cd $AMBERHOME
> > directory)
> >
> > Please suggest your kind further action. Also help how to set amber
> > use for all Rocks User's for Parallel use for same.
> >
> >
> >
> >
> >
> > Thanks & Regards,
> > Yasir Israr
> >
> > -----Original Message-----
> > From: Elvis Martis [mailto:elvis_bcp.elvismartis.in]
> > Sent: Friday, December 9, 2016 10:56 AM
> > To: Yasir Israr; AMBER Mailing List
> > Subject: Re: [AMBER] Installation of AMBER on Centos Rocks 6.2
> >
> > Hi Yasir,
> > Can you elaborate on what exactly you are unable to do?
> >
> > As far as setting the environment for AMBER is straightforward.
> > You can do two things here,
> > 1) define the amber environment in your bashrc or cshrc file in the
> > home directory. You can open and copy the contents of
> > $AMBERHOME/amber.sh for bashrc or $AMBERHOME/amber.csh for cshrc.
> > This will automatically set the environment in your profile.
> > 2) Alternatively, you can source the amber.sh or amber.csh by typing
> > "source </path_to_amber>/amber.sh" or "source </path_to_amber>/amber.csh"
> > to set the environment. Ignore the quotes.
> >
> > However, amber.sh and amber.csh will only appear after you have
> > successfully configured and compiled amber on your system.
> > All the best.
> >
> > Regards
> >
> > *Elvis Martis* Ph.D. Student, Bombay College of Pharmacy
> > [image: photo] Email: elvis_bcp.elvismartis.in
> > <elvis_bcp.elvismartis.in>
> > Website: http://www.elvismartis.in <http://www.elvismartis.in/>
> > group
> > website: http://www.profeccoutinho.net.in/
> > Address:
> >
> > Kalina, Santa Cruz [E]
> > , Mumbai, 400 098, INDIA
> >
> > Alt. e-mail: emartis12.live.com
> > <https://in.linkedin.com/in/elvisadrianmartis>
> >
> >
> > On 9 December 2016 at 09:39, Yasir Israr
> > <yasir.orionsolutions.co.in>
> > wrote:
> >
> > > [image: Boxbe] <https://www.boxbe.com/overview> Yasir Israr (
> > > yasir.orionsolutions.co.in) is not on your Guest List
> > > <https://www.boxbe.com/approved-list?tc_serial=27923477727&tc_rand
> > > =2
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> > > >
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> > > <https://www.boxbe.com/anno?tc_serial=27923477727&tc_rand=20173458
> > > 61
> > > &u
> > > tm_source=stf&utm_medium=email&utm_campaign=ANNO_MWTP&utm_content=
> > > 00
> > > 1&
> > > dom&key=hzan1%2BtMEch0ZWSgvq68eGLvNDNg9hqAr2ZbrNx464Y%3D&token=FbV
> > > QK
> > > 36 r6c8ysBYazDtJ1uzaByiecGUWgNVh05yu3M%2FJ2i%2Bhlp2l7y2c3SLXOvj6>
> > >
> > > I follow same but couldn't able to complete installation. Can
> > > anybody let me know after installation how to set AMBER use to
> > > user & there environment & path setting ?
> > >
> > > Thanks & Regards
> > > Yasir Israr
> > >
> > > > On 09-Dec-2016, at 8:38 AM, Elvis Martis
> > > > <elvis_bcp.elvismartis.in>
> > > wrote:
> > > >
> > > > HI Yasir,
> > > > Please follow Jason's page which gives step by step instructions
> > > > for installing AMBER on any OS.
> > > > http://jswails.wikidot.com/installing-amber14-and-ambertools14
> > > > <Also
> > > works
> > > > for Amber16>
> > > > All the best.
> > > >
> > > > Regards
> > > >
> > > > *Elvis Martis* Ph.D. Student, Bombay College of Pharmacy
> > > > [image: photo] Email: <elvis_bcp.elvismartis.in>
> > > > Website: http://www.elvismartis.in <http://www.elvismartis.in/>
> > > > group website: http://www.profeccoutinho.net.in/
> > > > Address:
> > > >
> > > > Kalina, Santa Cruz [E]
> > > > , Mumbai, 400 098, INDIA
> > > >
> > > > Alt. e-mail: emartis12.live.com
> > > > <https://in.linkedin.com/in/elvisadrianmartis>
> > > >
> > > >
> > > >> On 9 December 2016 at 07:53, Yasir Israr
> > > >> <yasir.orionsolutions.co.in>
> > > wrote:
> > > >>
> > > >> [image: Boxbe] <https://www.boxbe.com/overview> This message is
> > > eligible
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> > > >
> > > >>
> > > >> Hi Admins
> > > >> Please help in sharing installation guide for Rocks Centos.
> > > >>
> > > >> Thanks & Regards
> > > >> Yasir Israr
> > > >>
> > > >> _______________________________________________
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> > > >>
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Received on Sat Dec 10 2016 - 01:00:05 PST
